Variant report

Variant	rs8023187
Chromosome Location	chr14:55381662-55381663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55368257..55371585-chr14:55378577..55382650,5	MCF-7	breast:
2	chr14:55380924..55383878-chr14:55389692..55392247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10129318	0.82[AMR][1000 genomes]
rs10129802	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10131232	0.82[YRI][hapmap]
rs10133650	0.86[YRI][hapmap]
rs10133662	0.81[YRI][hapmap]
rs10136545	0.80[EUR][1000 genomes]
rs10136972	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10137071	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10140164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10149103	0.85[ASN][1000 genomes]
rs1107960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1107961	0.81[ASN][1000 genomes]
rs11158028	0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs11158029	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11621165	0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs11621177	0.85[ASN][1000 genomes]
rs11626396	0.85[ASN][1000 genomes]
rs11846514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11846809	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11847771	0.92[CHB][hapmap]
rs11852045	0.87[ASN][1000 genomes]
rs1187883	0.84[JPT][hapmap]
rs12147796	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17128052	0.84[CHB][hapmap]
rs17128120	0.92[JPT][hapmap]
rs17253633	0.92[JPT][hapmap]
rs17832269	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2149482	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2183081	0.86[YRI][hapmap]
rs28417208	0.80[EUR][1000 genomes]
rs28481699	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2878172	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2878174	0.92[JPT][hapmap]
rs3759664	0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs3759665	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3783641	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs3783642	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs3783644	0.81[ASN][1000 genomes]
rs3783645	0.81[AMR][1000 genomes]
rs4325453	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4335711	0.92[JPT][hapmap]
rs56164809	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56335168	0.80[EUR][1000 genomes]
rs57922954	0.80[EUR][1000 genomes]
rs58055971	0.80[EUR][1000 genomes]
rs60258834	0.81[ASN][1000 genomes]
rs61224609	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6572993	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6572994	0.82[ASN][1000 genomes]
rs66769866	0.81[EUR][1000 genomes]
rs67571433	0.81[EUR][1000 genomes]
rs68065548	0.80[EUR][1000 genomes]
rs7144602	0.82[YRI][hapmap]
rs7146285	0.83[CHB][hapmap];0.92[JPT][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7147201	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs7147286	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs7151670	0.81[EUR][1000 genomes]
rs7152033	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7153937	0.92[JPT][hapmap]
rs7159232	0.81[ASN][1000 genomes]
rs72715547	0.81[ASN][1000 genomes]
rs73280573	0.89[AFR][1000 genomes]
rs8006363	0.87[ASN][1000 genomes]
rs8007201	0.86[YRI][hapmap]
rs8007267	0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs8008150	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8008858	0.84[ASN][1000 genomes]
rs8009997	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8010570	0.81[ASN][1000 genomes]
rs8011446	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8012152	0.92[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8013521	0.82[ASN][1000 genomes]
rs8015172	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8017210	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs8018688	0.81[ASN][1000 genomes]
rs8019390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8019824	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8020545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8021303	0.82[ASN][1000 genomes]
rs8021370	0.80[EUR][1000 genomes]
rs8022049	0.92[JPT][hapmap]
rs8022453	0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs9285583	0.82[ASN][1000 genomes]
rs943913	0.83[ASN][1000 genomes]
rs943914	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55370600-55388600	Weak transcription	HepG2	liver

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