Variant report

Variant	rs7152033
Chromosome Location	chr14:55392754-55392755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55368170..55372100-chr14:55387270..55393006,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10129318	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10129802	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10136972	0.89[ASN][1000 genomes]
rs10137071	0.89[ASN][1000 genomes]
rs10140164	0.91[ASN][1000 genomes]
rs10150110	0.81[ASN][1000 genomes]
rs1107960	0.96[ASN][1000 genomes]
rs1107961	0.83[ASN][1000 genomes]
rs11158029	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11846514	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11846809	0.96[ASN][1000 genomes]
rs12147796	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17832269	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2149482	0.89[ASN][1000 genomes]
rs28446981	0.83[AMR][1000 genomes]
rs28481699	0.90[ASN][1000 genomes]
rs28693954	0.83[AMR][1000 genomes]
rs34988865	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3759665	0.89[ASN][1000 genomes]
rs3783643	0.82[ASN][1000 genomes]
rs3783644	0.84[ASN][1000 genomes]
rs3783645	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783646	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4325453	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4335711	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56164809	0.96[ASN][1000 genomes]
rs56206440	0.81[ASN][1000 genomes]
rs56335168	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57667631	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57922954	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58055971	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59323730	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60028867	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61224609	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6572993	0.84[ASN][1000 genomes]
rs6572994	0.85[ASN][1000 genomes]
rs66769866	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66820631	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67395322	0.85[AMR][1000 genomes]
rs67571433	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68065548	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7146285	0.85[ASN][1000 genomes]
rs7151670	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7157085	0.81[ASN][1000 genomes]
rs7159232	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715547	0.83[ASN][1000 genomes]
rs72715552	0.81[ASN][1000 genomes]
rs72715573	0.81[ASN][1000 genomes]
rs8005471	0.82[ASN][1000 genomes]
rs8008150	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009997	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8010570	0.83[ASN][1000 genomes]
rs8011446	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8012152	0.85[ASN][1000 genomes]
rs8013521	0.85[ASN][1000 genomes]
rs8015172	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8018800	0.81[ASN][1000 genomes]
rs8019220	0.81[ASN][1000 genomes]
rs8019390	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8019824	0.84[ASN][1000 genomes]
rs8021303	0.85[ASN][1000 genomes]
rs8021370	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8022049	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8023187	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285583	0.85[ASN][1000 genomes]
rs943913	0.83[ASN][1000 genomes]
rs943914	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55389600-55406600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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