Variant report

Variant	rs8006568
Chromosome Location	chr14:55382219-55382220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10143038	0.80[ASN][1000 genomes]
rs10149103	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1107961	0.87[ASN][1000 genomes]
rs11158028	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11621165	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11621177	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11626396	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11847771	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11852045	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3759664	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55751189	0.81[ASN][1000 genomes]
rs56213135	0.81[AMR][1000 genomes]
rs60258834	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72715547	0.87[ASN][1000 genomes]
rs72715552	0.82[ASN][1000 genomes]
rs8006363	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8007267	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8008858	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8010570	0.87[ASN][1000 genomes]
rs8018688	0.82[ASN][1000 genomes]
rs8022453	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs943913	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8006568	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55370600-55388600	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links