Variant report

Variant	rs11628804
Chromosome Location	chr14:24394605-24394606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1159372	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1957686	0.87[EUR][1000 genomes]
rs4981490	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4982821	0.81[EUR][1000 genomes]
rs4982824	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1991504	chr14:24394357-24394811	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3512704	chr14:24394459-24394659	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3512705	chr14:24394463-24394625	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3512703	chr14:24394495-24394656	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3384099	chr14:24394511-24394622	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3426175	chr14:24394519-24394630	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3512706	chr14:24394553-24394629	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3414074	chr14:24394557-24394607	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1001762	chr14:24394557-24394609	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1265334	chr14:24394575-24394628	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv85328	chr14:24394576-24394628	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24394400-24398600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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