Variant report

Variant	rs4982821
Chromosome Location	chr14:24380583-24380584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10135471	0.87[ASN][1000 genomes]
rs10139869	0.88[ASN][1000 genomes]
rs10142428	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158391	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1159372	0.90[EUR][1000 genomes]
rs11628804	0.81[EUR][1000 genomes]
rs1475457	0.86[ASN][1000 genomes]
rs1475458	0.86[ASN][1000 genomes]
rs1475459	0.86[ASN][1000 genomes]
rs1951733	0.87[ASN][1000 genomes]
rs1951734	0.85[ASN][1000 genomes]
rs1951735	0.87[ASN][1000 genomes]
rs1957683	0.86[ASN][1000 genomes]
rs1957686	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4491431	0.87[ASN][1000 genomes]
rs4981488	0.87[ASN][1000 genomes]
rs6573420	0.86[ASN][1000 genomes]
rs6573427	0.88[ASN][1000 genomes]
rs6573428	0.88[ASN][1000 genomes]
rs7149864	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7154065	0.85[ASN][1000 genomes]
rs8010302	0.81[ASN][1000 genomes]
rs8014495	0.87[ASN][1000 genomes]
rs8014557	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv976810	chr14:24355098-24391885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24379600-24380800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr14:24379600-24380800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:24379600-24381000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:24379600-24381000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:24379600-24381600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:24379800-24380600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:24380200-24380600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:24380200-24380800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:24380200-24380800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr14:24380200-24381000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:24380400-24380600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr14:24380400-24381000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:24380400-24384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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