Variant report

Variant	rs11629094
Chromosome Location	chr14:69724181-69724182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12588610	0.93[ASN][1000 genomes]
rs12590134	0.95[ASN][1000 genomes]
rs1890939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34842688	0.81[ASN][1000 genomes]
rs4902706	0.95[ASN][1000 genomes]
rs56286938	0.95[ASN][1000 genomes]
rs62637934	0.95[ASN][1000 genomes]
rs7141424	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs72720292	0.95[ASN][1000 genomes]
rs7493080	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11629094	ADAM21	cis	parietal	SCAN
rs11629094	RAD51L1	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
2	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
4	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:69709400-69726400	Weak transcription	Gastric	stomach
6	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
7	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
8	chr14:69716600-69724600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:69717000-69725200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69717400-69725800	Weak transcription	Left Ventricle	heart
11	chr14:69723000-69725800	Weak transcription	Right Ventricle	heart
12	chr14:69723600-69725600	Weak transcription	Fetal Heart	heart
13	chr14:69723800-69725000	Weak transcription	Fetal Brain Female	brain
14	chr14:69723800-69725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:69724000-69724200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:69724000-69724200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links