Variant report

Variant	rs4902706
Chromosome Location	chr14:69738132-69738133
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11629094	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12588610	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12590134	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890939	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34842688	0.83[ASN][1000 genomes]
rs56286938	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62637934	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141424	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720292	1.00[ASN][1000 genomes]
rs7493080	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3370420	chr14:69734099-69738497	Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4902706	GPX2	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69730800-69740200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:69730800-69754000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:69731800-69738400	Enhancers	Right Ventricle	heart
4	chr14:69733000-69748000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69733200-69738400	Enhancers	Left Ventricle	heart
6	chr14:69735800-69771600	Weak transcription	Fetal Intestine Small	intestine
7	chr14:69736200-69738200	Weak transcription	Fetal Heart	heart
8	chr14:69736600-69738200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr14:69736600-69740000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69736800-69740800	Weak transcription	HSMMtube	muscle
11	chr14:69737000-69738400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:69737400-69738200	Enhancers	HSMM	muscle
13	chr14:69737400-69738400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:69737600-69738200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:69737600-69738200	Enhancers	Adipose Nuclei	Adipose
16	chr14:69737600-69738400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:69737800-69738200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:69737800-69738200	Weak transcription	Right Atrium	heart
19	chr14:69737800-69738400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:69737800-69738400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:69737800-69738400	Enhancers	Fetal Brain Female	brain
22	chr14:69738000-69738200	Enhancers	Brain Substantia Nigra	brain
23	chr14:69738000-69738200	Enhancers	NHDF-Ad	bronchial

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