Variant report

Variant	rs11629199
Chromosome Location	chr14:24577476-24577477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24575156..24579604-chr14:24581629..24585415,10	K562	blood:
2	chr14:24532041..24534501-chr14:24576665..24578239,2	MCF-7	breast:
3	chr14:24576561..24578362-chr14:24614861..24616418,2	K562	blood:
4	chr14:24576432..24578231-chr14:24737364..24740268,2	K562	blood:
5	chr14:24576568..24579822-chr14:24581236..24586094,9	MCF-7	breast:
6	chr14:24577316..24580506-chr14:24613504..24618387,7	MCF-7	breast:
7	chr14:23937083..23939130-chr14:24576354..24578004,2	MCF-7	breast:
8	chr14:24527119..24528160-chr14:24577459..24578694,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100949	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000129460	Chromatin interaction
ENSG00000129535	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11574502	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs11629244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281703	1.00[JPT][hapmap]
rs35618680	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs762088	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv819606	chr14:24573080-24579171	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11629199	FAM158A	cis	lymphoblastoid	seeQTL

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24564800-24582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24565000-24578000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:24565000-24582600	Weak transcription	HSMM	muscle
4	chr14:24565200-24577800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:24565200-24578000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:24565200-24578000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:24565200-24578000	Weak transcription	Brain Angular Gyrus	brain
8	chr14:24565200-24578000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:24565200-24578000	Weak transcription	Hela-S3	cervix
10	chr14:24565200-24578000	Weak transcription	NHDF-Ad	bronchial
11	chr14:24565200-24582600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:24565200-24582600	Weak transcription	Left Ventricle	heart
13	chr14:24568200-24582600	Weak transcription	Right Ventricle	heart
14	chr14:24568200-24582600	Weak transcription	Stomach Mucosa	stomach
15	chr14:24568400-24577600	Weak transcription	Fetal Thymus	thymus
16	chr14:24568600-24577800	Weak transcription	Brain Substantia Nigra	brain
17	chr14:24568600-24582400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:24568600-24582600	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:24568800-24577800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:24569200-24582800	Weak transcription	Esophagus	oesophagus
21	chr14:24569600-24582600	Weak transcription	NHLF	lung
22	chr14:24570000-24578000	Weak transcription	HSMMtube	muscle
23	chr14:24570200-24578000	Weak transcription	Thymus	Thymus
24	chr14:24570600-24578000	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:24570800-24582600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:24572400-24579200	Weak transcription	Small Intestine	intestine
27	chr14:24572400-24582600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr14:24572600-24577800	Weak transcription	HMEC	breast
29	chr14:24572600-24578000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:24572600-24582600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:24572800-24577600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:24572800-24577600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:24573000-24578000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:24573000-24579400	Weak transcription	Pancreas	Pancrea
35	chr14:24573000-24582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:24573000-24582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:24573200-24577600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:24573200-24577600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr14:24573200-24578000	Weak transcription	Fetal Muscle Leg	muscle
40	chr14:24573200-24580200	Weak transcription	Gastric	stomach
41	chr14:24573200-24582800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:24573200-24582800	Weak transcription	Lung	lung
43	chr14:24573200-24582800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:24573400-24577600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:24573400-24577800	Weak transcription	Primary T cells from cord blood	blood
46	chr14:24573400-24578000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr14:24573400-24578000	Weak transcription	A549	lung
48	chr14:24573400-24578000	Weak transcription	K562	blood
49	chr14:24573400-24578000	Weak transcription	Osteobl	bone
50	chr14:24573400-24582600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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