Variant report

Variant	rs35618680
Chromosome Location	chr14:24572812-24572813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24570842..24573550-chr14:24657440..24659369,2	MCF-7	breast:
2	chr14:24572111..24574244-chr14:24608030..24610822,2	MCF-7	breast:
3	chr14:24527348..24529329-chr14:24572772..24574744,2	K562	blood:
4	chr14:24572731..24575018-chr14:24581882..24584441,3	K562	blood:
5	chr14:24520169..24522570-chr14:24571507..24573400,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196497	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000259321	Chromatin interaction
ENSG00000186648	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000100897	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10138006	0.81[AFR][1000 genomes]
rs11629199	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629244	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	esv988353	chr14:24570851-24575572	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24564200-24575200	Weak transcription	Aorta	Aorta
2	chr14:24564800-24582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:24565000-24573000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:24565000-24575200	Weak transcription	HUVEC	blood vessel
5	chr14:24565000-24578000	Weak transcription	Brain Anterior Caudate	brain
6	chr14:24565000-24582600	Weak transcription	HSMM	muscle
7	chr14:24565200-24573000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:24565200-24574000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:24565200-24575000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:24565200-24576000	Weak transcription	Fetal Kidney	kidney
11	chr14:24565200-24576800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:24565200-24577800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:24565200-24578000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:24565200-24578000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:24565200-24578000	Weak transcription	Brain Angular Gyrus	brain
16	chr14:24565200-24578000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:24565200-24578000	Weak transcription	Hela-S3	cervix
18	chr14:24565200-24578000	Weak transcription	NHDF-Ad	bronchial
19	chr14:24565200-24582600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:24565200-24582600	Weak transcription	Left Ventricle	heart
21	chr14:24565800-24574200	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr14:24565800-24574200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:24565800-24574400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:24566000-24573200	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:24566000-24573600	Genic enhancers	Liver	Liver
26	chr14:24566000-24574200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:24566200-24573200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:24566200-24573400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr14:24566200-24573800	Strong transcription	Dnd41	blood
30	chr14:24566200-24574000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:24566200-24574400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:24566400-24574000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:24566400-24575000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr14:24566800-24573200	Strong transcription	Spleen	Spleen
35	chr14:24567000-24573600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:24567000-24574000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:24567200-24573400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:24567200-24573400	Strong transcription	Primary T cells from cord blood	blood
39	chr14:24567200-24573600	Strong transcription	Colonic Mucosa	Colon
40	chr14:24567200-24573600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr14:24567200-24573600	Strong transcription	GM12878-XiMat	blood
42	chr14:24567200-24574200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:24567200-24574400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:24567200-24574400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:24567200-24574600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr14:24567200-24574800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr14:24567400-24573600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:24568200-24582600	Weak transcription	Right Ventricle	heart
49	chr14:24568200-24582600	Weak transcription	Stomach Mucosa	stomach
50	chr14:24568400-24577600	Weak transcription	Fetal Thymus	thymus

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