Variant report

Variant	rs11629429
Chromosome Location	chr14:24684144-24684145
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr14:24684059-24684269	K562	blood:	n/a	n/a
2	POLR2A	chr14:24681154-24686357	HepG2	liver:	n/a	n/a

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24614698..24618732-chr14:24681293..24686635,9	MCF-7	breast:
2	chr14:24681838..24686459-chr14:24698203..24703209,7	K562	blood:
3	chr14:24627288..24629695-chr14:24682917..24684693,2	K562	blood:
4	chr14:24680927..24686311-chr14:24766466..24771455,6	K562	blood:
5	chr14:24682923..24685133-chr14:24776691..24778395,2	MCF-7	breast:
6	chr14:24682906..24687740-chr14:24707883..24712855,6	K562	blood:
7	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
8	chr14:24683967..24686751-chr14:24798225..24800322,2	MCF-7	breast:
9	chr14:24582139..24585680-chr14:24681172..24684966,4	K562	blood:
10	chr14:24682382..24684800-chr14:24800505..24802328,2	K562	blood:
11	chr14:24681602..24685045-chr14:24898549..24902277,4	MCF-7	breast:
12	chr14:24608866..24610755-chr14:24681114..24684449,4	MCF-7	breast:
13	chr14:24680755..24686632-chr14:24737203..24743863,8	MCF-7	breast:
14	chr14:24682270..24687913-chr14:24764870..24771791,12	MCF-7	breast:
15	chr14:24682724..24684618-chr16:2203699..2206163,2	MCF-7	breast:
16	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
17	chr14:24627382..24636644-chr14:24680297..24686914,11	MCF-7	breast:
18	chr14:24683639..24685254-chr14:24901523..24903604,3	MCF-7	breast:
19	chr14:24682802..24685207-chr14:24711355..24714494,4	K562	blood:
20	chr14:24656637..24660595-chr14:24683855..24686255,4	K562	blood:
21	chr14:24581643..24583639-chr14:24682241..24684966,3	K562	blood:
22	chr14:24618673..24621227-chr14:24682825..24685142,2	K562	blood:
23	chr14:24682332..24685366-chr14:24686250..24689239,4	K562	blood:
24	chr14:24683518..24685322-chr14:24738872..24741925,4	K562	blood:
25	chr12:57480017..57482545-chr14:24683866..24686216,2	MCF-7	breast:
26	chr14:24681591..24684402-chr14:24776273..24778851,2	K562	blood:

No data

Variant related genes	Relation type
TM9SF1	TF binding region
ENSG00000254692	TF binding region
CHMP4A	TF binding region
ENSG00000100908	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000260260	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000272658	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000199804	Chromatin interaction
ENSG00000131653	Chromatin interaction
ENSG00000166881	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100926	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000259522	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000259529	Chromatin interaction
ENSG00000213928	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12050101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2295316	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28372734	1.00[AMR][1000 genomes]
rs34655126	1.00[AMR][1000 genomes]
rs3783441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41293836	1.00[AMR][1000 genomes]
rs4982873	0.92[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24682600-24684600	Weak transcription	Aorta	Aorta
2	chr14:24682800-24684200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:24682800-24684400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:24682800-24684600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:24682800-24684600	Enhancers	Placenta	Placenta
6	chr14:24682800-24684600	Weak transcription	Ovary	ovary
7	chr14:24682800-24684600	Enhancers	Stomach Mucosa	stomach
8	chr14:24683000-24684200	Flanking Active TSS	Dnd41	blood
9	chr14:24683000-24684400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:24683000-24684400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr14:24683000-24684400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:24683000-24684400	Enhancers	Brain Substantia Nigra	brain
13	chr14:24683000-24684400	Weak transcription	Lung	lung
14	chr14:24683000-24684600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:24683000-24684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:24683000-24684600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:24683000-24684600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:24683000-24684600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr14:24683000-24684600	Enhancers	Liver	Liver
20	chr14:24683000-24684600	Weak transcription	Esophagus	oesophagus
21	chr14:24683000-24684600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:24683200-24684200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr14:24683200-24684200	Genic enhancers	Fetal Muscle Leg	muscle
24	chr14:24683200-24684200	Enhancers	Pancreas	Pancrea
25	chr14:24683200-24684200	Flanking Active TSS	HepG2	liver
26	chr14:24683200-24684400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:24683200-24684400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:24683200-24684400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr14:24683200-24684400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr14:24683200-24684400	Enhancers	Primary T cells from cord blood	blood
31	chr14:24683200-24684400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr14:24683200-24684400	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr14:24683200-24684400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr14:24683200-24684400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:24683200-24684400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:24683200-24684400	Enhancers	Brain Angular Gyrus	brain
37	chr14:24683200-24684400	Enhancers	Brain Anterior Caudate	brain
38	chr14:24683200-24684400	Enhancers	Colon Smooth Muscle	Colon
39	chr14:24683200-24684400	Enhancers	Fetal Heart	heart
40	chr14:24683200-24684400	Enhancers	Fetal Intestine Large	intestine
41	chr14:24683200-24684400	Enhancers	Fetal Intestine Small	intestine
42	chr14:24683200-24684400	Enhancers	Fetal Stomach	stomach
43	chr14:24683200-24684400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr14:24683200-24684400	Weak transcription	Right Atrium	heart
45	chr14:24683200-24684400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr14:24683200-24684400	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr14:24683200-24684400	Enhancers	Thymus	Thymus
48	chr14:24683200-24684600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:24683200-24684600	Enhancers	Primary B cells from cord blood	blood
50	chr14:24683200-24684600	Enhancers	Primary hematopoietic stem cells	blood

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