Variant report

Variant	rs3783441
Chromosome Location	chr14:24679274-24679275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24614107..24617488-chr14:24678980..24682276,4	K562	blood:
2	chr14:24657069..24662255-chr14:24679017..24683823,7	K562	blood:
3	chr14:24677987..24679713-chr14:24763984..24766313,2	K562	blood:
4	chr14:24655487..24659760-chr14:24674840..24680491,9	MCF-7	breast:
5	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
6	chr14:24663072..24666624-chr14:24679241..24683731,7	K562	blood:

Variant related genes	Relation type
ENSG00000259522	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000100926	Chromatin interaction
ENSG00000100911	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11629429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295316	0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2295320	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28372734	1.00[AMR][1000 genomes]
rs34655126	1.00[AMR][1000 genomes]
rs41293836	1.00[AMR][1000 genomes]
rs4982873	0.85[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24665800-24681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:24666600-24682200	Weak transcription	Fetal Heart	heart
3	chr14:24668000-24680600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:24668600-24681000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:24668600-24681000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:24670200-24680000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:24670400-24680200	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr14:24670400-24680800	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:24670600-24679800	Strong transcription	HepG2	liver
10	chr14:24670600-24680200	Strong transcription	Osteobl	bone
11	chr14:24670600-24680800	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr14:24670600-24681000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr14:24670600-24681200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:24670600-24681400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:24671200-24681200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:24671800-24681000	Strong transcription	Fetal Muscle Leg	muscle
17	chr14:24672000-24680400	Strong transcription	Primary T cells from cord blood	blood
18	chr14:24672000-24680800	Strong transcription	Fetal Intestine Large	intestine
19	chr14:24672000-24681000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr14:24672000-24681200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr14:24672200-24680600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr14:24672200-24681000	Strong transcription	Brain Hippocampus Middle	brain
23	chr14:24672200-24681200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:24672200-24681200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:24672400-24681000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:24672400-24681200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:24672600-24680600	Strong transcription	Dnd41	blood
28	chr14:24672600-24681000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:24672600-24682000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr14:24673000-24680800	Strong transcription	Adipose Nuclei	Adipose
31	chr14:24673200-24680200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:24673200-24681000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr14:24673200-24681000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:24673200-24681000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:24673400-24680800	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr14:24673400-24681000	Strong transcription	Liver	Liver
37	chr14:24673600-24681000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:24673600-24681200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:24673600-24681200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:24673600-24681200	Strong transcription	Fetal Brain Female	brain
41	chr14:24673800-24680800	Strong transcription	Brain Angular Gyrus	brain
42	chr14:24673800-24680800	Strong transcription	Brain Cingulate Gyrus	brain
43	chr14:24673800-24681000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:24673800-24681000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr14:24673800-24681200	Strong transcription	A549	lung
46	chr14:24674000-24680600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:24674000-24680600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:24674000-24680800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:24674000-24681000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:24674000-24681000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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