Variant report

Variant	rs11629747
Chromosome Location	chr15:78322564-78322565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11629534	1.00[AFR][1000 genomes]
rs11633444	1.00[AFR][1000 genomes]
rs34305311	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78305400-78329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78305600-78325800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:78308800-78327200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78309200-78330200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:78309200-78330800	Weak transcription	A549	lung
10	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:78311200-78322600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:78311800-78323400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:78311800-78326800	Weak transcription	K562	blood
14	chr15:78312000-78323000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:78312200-78322800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:78312200-78323200	Strong transcription	Fetal Intestine Large	intestine
17	chr15:78312400-78322600	Strong transcription	Primary T cells from cord blood	blood
18	chr15:78312400-78323200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:78312600-78322600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:78312600-78322800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr15:78312600-78323200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:78312600-78323400	Strong transcription	Dnd41	blood
23	chr15:78312600-78323400	Strong transcription	Osteobl	bone
24	chr15:78312800-78322600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:78312800-78323200	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:78313000-78327600	Weak transcription	Fetal Brain Male	brain
27	chr15:78316000-78324000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:78316000-78332400	Weak transcription	Hela-S3	cervix
29	chr15:78316200-78323200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:78316200-78324600	Strong transcription	Fetal Intestine Small	intestine
31	chr15:78316200-78326200	Weak transcription	Fetal Kidney	kidney
32	chr15:78317000-78324200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:78317000-78327800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:78317200-78324000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:78317400-78323200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr15:78317400-78324200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:78317400-78326000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:78317400-78326200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:78317600-78324600	Strong transcription	Liver	Liver
42	chr15:78317600-78326800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:78317600-78327000	Weak transcription	NH-A	brain
44	chr15:78317600-78327400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:78317800-78322600	Strong transcription	Fetal Lung	lung
46	chr15:78317800-78322600	Strong transcription	HSMM	muscle
47	chr15:78317800-78322800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:78317800-78323200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr15:78317800-78323200	Strong transcription	Fetal Thymus	thymus
50	chr15:78317800-78323600	Strong transcription	Monocytes-CD14+_RO01746	blood

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