Variant report

Variant	rs34305311
Chromosome Location	chr15:78506656-78506657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78506069..78508704-chr15:78511024..78513521,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11629747	1.00[AFR][1000 genomes]
rs11633444	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78494200-78508800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr15:78494200-78509800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr15:78494800-78508800	Enhancers	Brain Hippocampus Middle	brain
4	chr15:78494800-78509800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr15:78495400-78510000	Enhancers	Pancreas	Pancrea
6	chr15:78495400-78511000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:78496000-78507200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:78496400-78507800	Enhancers	Brain Anterior Caudate	brain
9	chr15:78497200-78506800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr15:78502600-78508800	Weak transcription	Gastric	stomach
11	chr15:78502800-78508200	Weak transcription	Liver	Liver
12	chr15:78503800-78507800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:78504000-78510000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:78504200-78506800	Enhancers	Right Atrium	heart
15	chr15:78504200-78507600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:78504400-78509800	Enhancers	Brain Substantia Nigra	brain
17	chr15:78504600-78507200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:78505000-78507200	Weak transcription	Fetal Heart	heart
19	chr15:78505200-78506800	Enhancers	Psoas Muscle	Psoas
20	chr15:78505400-78508600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:78505600-78508600	Weak transcription	NHDF-Ad	bronchial
22	chr15:78505600-78509000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:78505800-78507200	Enhancers	Hela-S3	cervix
24	chr15:78505800-78507200	Weak transcription	K562	blood
25	chr15:78505800-78508000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:78505800-78508200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:78505800-78508600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:78505800-78508800	Weak transcription	Fetal Intestine Small	intestine
29	chr15:78505800-78509000	Weak transcription	NH-A	brain
30	chr15:78506000-78507000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:78506000-78507000	Weak transcription	A549	lung
32	chr15:78506000-78507400	Weak transcription	HSMMtube	muscle
33	chr15:78506000-78508200	Weak transcription	Left Ventricle	heart
34	chr15:78506000-78508200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:78506000-78508200	Weak transcription	Small Intestine	intestine
36	chr15:78506000-78508400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:78506000-78508600	Weak transcription	Placenta	Placenta
38	chr15:78506000-78508800	Weak transcription	Fetal Intestine Large	intestine
39	chr15:78506200-78508200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:78506200-78508200	Weak transcription	Brain Angular Gyrus	brain
41	chr15:78506200-78508200	Weak transcription	Colonic Mucosa	Colon
42	chr15:78506400-78506800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr15:78506400-78507000	Weak transcription	Right Ventricle	heart
44	chr15:78506600-78507000	Weak transcription	Esophagus	oesophagus
45	chr15:78506600-78507400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:78506600-78507400	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:78506600-78508200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:78506600-78508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:78506600-78509200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links