Variant report

Variant	rs11630141
Chromosome Location	chr15:56028013-56028014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55957804..55959845-chr15:56026147..56028031,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10851591	0.97[ASN][1000 genomes]
rs12442771	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12591246	0.90[ASN][1000 genomes]
rs12592192	0.84[ASN][1000 genomes]
rs16976472	0.83[ASN][1000 genomes]
rs1814329	0.82[ASN][1000 genomes]
rs2008336	0.97[ASN][1000 genomes]
rs2414424	0.85[ASN][1000 genomes]
rs2414426	0.87[ASN][1000 genomes]
rs2414427	0.85[ASN][1000 genomes]
rs2414430	0.87[ASN][1000 genomes]
rs2414431	0.87[ASN][1000 genomes]
rs28485308	0.93[ASN][1000 genomes]
rs28575567	0.93[ASN][1000 genomes]
rs4377101	0.90[ASN][1000 genomes]
rs4774802	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4774803	0.98[ASN][1000 genomes]
rs62043872	0.82[ASN][1000 genomes]
rs6493809	0.90[ASN][1000 genomes]
rs6493814	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs687128	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71110312	0.87[ASN][1000 genomes]
rs715321	0.87[ASN][1000 genomes]
rs7161967	0.92[ASN][1000 genomes]
rs7162371	0.97[ASN][1000 genomes]
rs7162879	0.83[ASN][1000 genomes]
rs7180112	0.84[ASN][1000 genomes]
rs7181212	0.93[ASN][1000 genomes]
rs7182733	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7359255	0.81[ASN][1000 genomes]
rs8023911	0.92[ASN][1000 genomes]
rs8034414	0.98[ASN][1000 genomes]
rs8037136	0.93[ASN][1000 genomes]
rs8042029	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1049774	chr15:55759573-56044600	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56008000-56028200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:56008000-56029000	Weak transcription	Hela-S3	cervix
3	chr15:56008400-56029600	Weak transcription	HepG2	liver
4	chr15:56013400-56028400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:56013600-56028200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:56015400-56029600	Weak transcription	A549	lung
7	chr15:56017800-56033400	Weak transcription	Ovary	ovary
8	chr15:56024400-56030800	Weak transcription	Psoas Muscle	Psoas
9	chr15:56025000-56033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:56025400-56028800	Weak transcription	HUVEC	blood vessel
11	chr15:56026400-56028800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:56026400-56029400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:56026400-56030800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:56026800-56028600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:56027200-56029400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr15:56027200-56030600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:56027800-56029800	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:56027800-56033000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:56028000-56028200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr15:56028000-56028600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:56028000-56028800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:56028000-56029400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:56028000-56030000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr15:56028000-56030200	Enhancers	Fetal Kidney	kidney

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