Variant report

Variant	rs11630770
Chromosome Location	chr15:77469643-77469644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11630804	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632999	0.82[ASW][hapmap];0.80[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12904882	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34129891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028830	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77437000-77471200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:77438600-77470800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:77450400-77471200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:77450600-77471200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:77450800-77471200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:77451000-77470800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:77451000-77470800	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:77451000-77471200	Weak transcription	HSMM	muscle
9	chr15:77451000-77478800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:77451200-77471800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:77451200-77491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:77451400-77471200	Weak transcription	NHDF-Ad	bronchial
13	chr15:77454000-77470000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:77454000-77471200	Weak transcription	NHLF	lung
15	chr15:77454000-77472400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:77454200-77471200	Weak transcription	Placenta	Placenta
17	chr15:77454800-77471200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:77456400-77471800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:77456600-77470800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:77456600-77471400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:77456600-77471600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:77457200-77471600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:77457200-77475200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:77457200-77475400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:77457800-77471200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:77458200-77471200	Weak transcription	Spleen	Spleen
27	chr15:77460000-77470200	Weak transcription	Primary B cells from cord blood	blood
28	chr15:77460800-77471200	Weak transcription	Fetal Lung	lung
29	chr15:77460800-77479200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:77461200-77471200	Weak transcription	Right Ventricle	heart
31	chr15:77461400-77469800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:77461400-77471200	Weak transcription	Fetal Stomach	stomach
33	chr15:77461600-77471000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:77461600-77471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:77461600-77471200	Weak transcription	Aorta	Aorta
36	chr15:77461600-77471200	Weak transcription	Left Ventricle	heart
37	chr15:77461600-77471800	Weak transcription	HSMMtube	muscle
38	chr15:77461600-77496800	Weak transcription	Lung	lung
39	chr15:77461800-77470600	Weak transcription	Fetal Heart	heart
40	chr15:77461800-77470800	Weak transcription	Primary T cells from cord blood	blood
41	chr15:77461800-77472400	Weak transcription	NH-A	brain
42	chr15:77465200-77477000	Weak transcription	Gastric	stomach
43	chr15:77465400-77471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:77465400-77488200	Weak transcription	Psoas Muscle	Psoas
45	chr15:77466000-77471000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:77466200-77470600	Weak transcription	Fetal Intestine Large	intestine
47	chr15:77466200-77471200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:77466200-77479000	Weak transcription	Brain Anterior Caudate	brain
49	chr15:77466200-77479400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:77466400-77470600	Weak transcription	Rectal Mucosa Donor 29	rectum

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