Variant report

Variant	rs34129891
Chromosome Location	chr15:77481210-77481211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11630770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630804	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904882	0.82[AMR][1000 genomes]
rs8028830	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77451200-77491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:77461600-77496800	Weak transcription	Lung	lung
3	chr15:77465400-77488200	Weak transcription	Psoas Muscle	Psoas
4	chr15:77467200-77491400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:77469400-77483800	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:77469800-77491200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:77469800-77499200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:77471000-77482600	Weak transcription	Fetal Brain Male	brain
9	chr15:77471400-77505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:77471600-77481600	Weak transcription	Pancreas	Pancrea
11	chr15:77471800-77481400	Weak transcription	Spleen	Spleen
12	chr15:77471800-77482000	Weak transcription	Colonic Mucosa	Colon
13	chr15:77471800-77491400	Weak transcription	Aorta	Aorta
14	chr15:77472400-77500800	Weak transcription	HSMMtube	muscle
15	chr15:77473000-77483600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
17	chr15:77474200-77482400	Enhancers	Primary B cells from peripheral blood	blood
18	chr15:77474200-77490600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:77474800-77482600	Enhancers	Primary B cells from cord blood	blood
20	chr15:77476400-77491400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:77477200-77482200	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:77477200-77482800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:77477200-77485800	Enhancers	Fetal Heart	heart
24	chr15:77477600-77482400	Enhancers	Adipose Nuclei	Adipose
25	chr15:77477800-77482400	Enhancers	NHDF-Ad	bronchial
26	chr15:77478000-77481600	Weak transcription	Gastric	stomach
27	chr15:77478200-77481600	Weak transcription	Right Ventricle	heart
28	chr15:77478800-77482200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr15:77479000-77482400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:77479200-77481800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:77479200-77481800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:77479200-77481800	Enhancers	Osteobl	bone
33	chr15:77479200-77482200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr15:77479400-77481600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:77479400-77486400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:77479400-77494400	Weak transcription	HepG2	liver
37	chr15:77479600-77490800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:77479800-77481800	Enhancers	NHLF	lung
39	chr15:77480000-77481800	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr15:77480200-77481600	Weak transcription	Esophagus	oesophagus
41	chr15:77480200-77481600	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:77480200-77481800	Weak transcription	Stomach Mucosa	stomach
43	chr15:77480400-77481600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:77480400-77481600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:77480400-77482600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:77480400-77482600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr15:77480400-77485200	Weak transcription	Fetal Intestine Small	intestine
48	chr15:77480400-77487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:77480400-77488000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:77480400-77488000	Weak transcription	Brain Inferior Temporal Lobe	brain

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