Variant report

Variant	rs11630912
Chromosome Location	chr15:54614455-54614456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11629500	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs11629831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629995	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11630985	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11633330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11633475	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs11633514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11633544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11633674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11634047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11634125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11634629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11634764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11634781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11635260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11637336	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11638441	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11638760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11638875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355508	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355509	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17237571	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes]
rs34270881	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4506835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57505610	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59738575	0.81[AMR][1000 genomes]
rs73415771	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73417782	0.81[AMR][1000 genomes]
rs953994	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs981450	0.87[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54602800-54638000	Weak transcription	Aorta	Aorta
3	chr15:54613200-54614800	Enhancers	Brain Germinal Matrix	brain
4	chr15:54613400-54616000	Enhancers	Fetal Brain Male	brain
5	chr15:54614400-54615600	Weak transcription	Fetal Brain Female	brain

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