Variant report

Variant	rs11630985
Chromosome Location	chr15:54623776-54623777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11629831	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11629995	0.88[AMR][1000 genomes]
rs11630912	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11633330	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11633514	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11633544	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11633674	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11634047	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11634125	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11634629	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11634764	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11634781	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11635260	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11637336	0.88[AMR][1000 genomes]
rs11638441	0.88[AMR][1000 genomes]
rs11638760	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11638833	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11638875	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1355506	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1355507	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1355508	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1355509	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17237571	0.88[AMR][1000 genomes]
rs34270881	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4506835	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57505610	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73415771	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54602800-54638000	Weak transcription	Aorta	Aorta
3	chr15:54621600-54632800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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