Variant report

Variant	rs11631113
Chromosome Location	chr15:72572303-72572304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72572263..72574208-chr15:72582105..72583633,2	K562	blood:
2	chr15:72564271..72566801-chr15:72572069..72573786,2	K562	blood:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11072353	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072356	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11072357	1.00[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11629508	1.00[CEU][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11635828	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11636289	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11637797	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11857752	0.91[MEX][hapmap]
rs12911449	0.84[AMR][1000 genomes]
rs12914971	1.00[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12915032	0.81[JPT][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs2162235	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2278150	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288258	0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288259	0.91[MEX][hapmap]
rs2303449	0.91[MEX][hapmap]
rs2912226	0.84[AMR][1000 genomes]
rs2912229	0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs2959938	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3087652	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4606667	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4776591	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4777498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777503	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs55792138	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59353578	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495000	1.00[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67849115	0.84[ASN][1000 genomes]
rs8026600	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963375	0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv3494908	chr15:72570698-72576646	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv3494909	chr15:72571098-72576596	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
7	esv3494906	chr15:72571458-72576046	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv16227	chr15:72571691-72575838	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3494901	chr15:72571693-72575683	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3494902	chr15:72571729-72575642	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3311832	chr15:72571740-72575685	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3494903	chr15:72571778-72575661	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3311831	chr15:72571790-72575658	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3494905	chr15:72571809-72575621	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3494904	chr15:72571919-72575591	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3311833	chr15:72571928-72575582	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3494910	chr15:72571928-72575582	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72565800-72572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:72566000-72573600	Weak transcription	Brain Anterior Caudate	brain
3	chr15:72566000-72573600	Weak transcription	Brain Substantia Nigra	brain
4	chr15:72566000-72575800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:72566000-72576400	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:72566000-72577800	Weak transcription	Fetal Intestine Small	intestine
7	chr15:72566000-72582400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
9	chr15:72566200-72573000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:72566200-72573600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:72566200-72577000	Weak transcription	Ovary	ovary
12	chr15:72566200-72577600	Weak transcription	Brain Angular Gyrus	brain
13	chr15:72566200-72578400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:72566200-72579200	Weak transcription	Primary T cells from cord blood	blood
15	chr15:72566400-72573600	Weak transcription	K562	blood
16	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:72567800-72581400	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:72569000-72576800	Weak transcription	HSMMtube	muscle
19	chr15:72569200-72574000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:72571200-72573600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:72572200-72573600	Weak transcription	Brain Cingulate Gyrus	brain

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