Variant report

Variant	rs4777503
Chromosome Location	chr15:72650870-72650871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72649583..72651262-chr15:72653562..72655522,2	MCF-7	breast:
2	chr15:72644683..72646818-chr15:72649566..72652773,3	MCF-7	breast:
3	chr15:72650512..72652405-chr15:72665607..72667984,2	K562	blood:
4	chr15:72643627..72645538-chr15:72648082..72650902,2	K562	blood:
5	chr15:72649215..72653843-chr15:72765321..72768285,4	MCF-7	breast:
6	chr15:72648214..72651492-chr15:72765050..72767874,3	MCF-7	breast:
7	chr15:72633335..72635089-chr15:72648050..72650924,2	K562	blood:
8	chr15:72649829..72652012-chr15:72666433..72669438,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000260729	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10438367	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10438368	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10468051	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11072356	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11072357	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs11072360	0.90[EUR][1000 genomes]
rs11629508	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11631113	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs11635828	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11636289	0.80[AFR][1000 genomes]
rs11637797	0.82[AMR][1000 genomes]
rs12592727	0.90[EUR][1000 genomes]
rs12902886	0.90[EUR][1000 genomes]
rs12904366	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12910617	0.90[EUR][1000 genomes]
rs12914971	0.92[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12915032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16956771	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2162235	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2278150	0.93[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes]
rs2288258	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2288259	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2303449	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2303450	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3087652	0.82[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4606667	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4777498	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs4777504	0.86[AMR][1000 genomes]
rs6495000	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7174287	0.86[AMR][1000 genomes]
rs963375	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
2	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
3	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:72633000-72651200	Strong transcription	Thymus	Thymus
6	chr15:72633000-72652000	Strong transcription	Fetal Stomach	stomach
7	chr15:72633400-72651600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:72633800-72651200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:72635400-72651400	Strong transcription	Primary T cells from cord blood	blood
11	chr15:72636000-72651200	Strong transcription	GM12878-XiMat	blood
12	chr15:72636000-72651600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:72636400-72652000	Strong transcription	Primary B cells from cord blood	blood
14	chr15:72639400-72652600	Strong transcription	Fetal Intestine Small	intestine
15	chr15:72640600-72667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:72641800-72664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr15:72642000-72667000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:72644000-72660400	Weak transcription	Fetal Brain Male	brain
19	chr15:72645200-72651200	Strong transcription	Primary hematopoietic stem cells	blood
20	chr15:72645600-72651200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:72647200-72651000	Weak transcription	HUVEC	blood vessel
22	chr15:72647600-72651000	Weak transcription	Small Intestine	intestine
23	chr15:72648000-72651000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:72648600-72667000	Weak transcription	Colonic Mucosa	Colon
26	chr15:72648600-72667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:72648800-72667000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:72649000-72651000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:72649000-72651200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:72649000-72651200	Weak transcription	A549	lung
31	chr15:72649000-72651800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr15:72649000-72662200	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:72649000-72667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:72649200-72651000	Weak transcription	NHDF-Ad	bronchial
35	chr15:72649200-72651000	Weak transcription	NHLF	lung
36	chr15:72649200-72651200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr15:72649200-72651200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:72649200-72651200	Weak transcription	Placenta	Placenta
39	chr15:72649200-72658200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:72649200-72658200	Weak transcription	Dnd41	blood
41	chr15:72649200-72658400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:72649200-72660000	Weak transcription	Fetal Lung	lung
43	chr15:72649200-72660600	Weak transcription	Fetal Kidney	kidney
44	chr15:72649200-72660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:72649200-72661600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:72649200-72662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:72649200-72663800	Weak transcription	Pancreas	Pancrea
48	chr15:72649200-72666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:72649200-72667000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:72649200-72667000	Weak transcription	Fetal Brain Female	brain

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