Variant report

Variant	rs10438367
Chromosome Location	chr15:72651780-72651781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72644683..72646818-chr15:72649566..72652773,3	MCF-7	breast:
2	chr15:72650512..72652405-chr15:72665607..72667984,2	K562	blood:
3	chr15:72651083..72651937-chr15:72668153..72668892,2	MCF-7	breast:
4	chr15:72649215..72653843-chr15:72765321..72768285,4	MCF-7	breast:
5	chr15:72649829..72652012-chr15:72666433..72669438,3	K562	blood:

Variant related genes	Relation type
ENSG00000213614	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000260339	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10220917	0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs10438368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467945	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10468051	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11857752	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12592727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12902886	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12904366	0.92[EUR][1000 genomes]
rs12910617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12915032	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16956771	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2288256	0.82[JPT][hapmap]
rs2288258	0.90[AMR][1000 genomes]
rs2288259	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2303449	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303450	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777503	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73442510	0.87[AFR][1000 genomes]
rs963375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
2	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:72633000-72652000	Strong transcription	Fetal Stomach	stomach
5	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:72636400-72652000	Strong transcription	Primary B cells from cord blood	blood
7	chr15:72639400-72652600	Strong transcription	Fetal Intestine Small	intestine
8	chr15:72640600-72667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:72641800-72664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:72642000-72667000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:72644000-72660400	Weak transcription	Fetal Brain Male	brain
12	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:72648600-72667000	Weak transcription	Colonic Mucosa	Colon
14	chr15:72648600-72667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:72648800-72667000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:72649000-72651800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:72649000-72662200	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:72649000-72667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:72649200-72658200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:72649200-72658200	Weak transcription	Dnd41	blood
21	chr15:72649200-72658400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:72649200-72660000	Weak transcription	Fetal Lung	lung
23	chr15:72649200-72660600	Weak transcription	Fetal Kidney	kidney
24	chr15:72649200-72660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:72649200-72661600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:72649200-72662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:72649200-72663800	Weak transcription	Pancreas	Pancrea
28	chr15:72649200-72666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:72649200-72667000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:72649200-72667000	Weak transcription	Fetal Brain Female	brain
31	chr15:72649200-72667600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:72649400-72652200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:72649400-72658200	Weak transcription	Hela-S3	cervix
34	chr15:72649400-72659600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:72649400-72663400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:72649400-72666600	Weak transcription	Gastric	stomach
37	chr15:72649400-72667000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:72649600-72662400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:72649800-72660800	Weak transcription	Brain Germinal Matrix	brain
40	chr15:72650000-72652400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:72650000-72652600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:72650000-72653000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:72650000-72655200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:72650000-72660600	Weak transcription	Liver	Liver
45	chr15:72650200-72652000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:72650200-72652000	Enhancers	Esophagus	oesophagus
47	chr15:72650200-72652000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:72650200-72652400	Enhancers	Adipose Nuclei	Adipose
49	chr15:72650200-72652400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr15:72650200-72652800	Enhancers	Skeletal Muscle Female	skeletal muscle

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