Variant report

Variant	rs10467945
Chromosome Location	chr15:72646429-72646430
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72645882..72648053-chr15:72651452..72653914,2	K562	blood:
2	chr15:72645567..72647436-chr15:72666899..72669369,2	MCF-7	breast:
3	chr15:72640931..72642658-chr15:72644358..72646802,2	K562	blood:
4	chr15:72644683..72646818-chr15:72649566..72652773,3	MCF-7	breast:
5	chr15:72639015..72641229-chr15:72644318..72647106,2	MCF-7	breast:
6	chr15:72644337..72647159-chr15:72667335..72669654,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213614	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000260339	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10152810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10220917	0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs10438367	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10438368	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10468051	0.81[YRI][hapmap];0.92[AMR][1000 genomes]
rs11072360	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11857752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437909	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440768	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442850	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12591626	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12592727	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12593434	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12595243	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs12902886	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12910617	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs16956759	0.81[YRI][hapmap]
rs16956771	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs16956783	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16956788	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16956884	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16956890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16956893	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs16956917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16956997	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs16957050	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs17841142	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1800428	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2288258	0.85[AMR][1000 genomes]
rs2288259	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2303448	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2303449	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2303450	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs35778233	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3784586	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4556749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4777504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4777505	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4777506	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4777507	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7174287	0.93[EUR][1000 genomes]
rs73442510	0.91[AFR][1000 genomes]
rs963375	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
2	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
3	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:72627800-72650400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:72629200-72649600	Strong transcription	Left Ventricle	heart
6	chr15:72629800-72649200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:72630000-72649200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:72632400-72650000	Weak transcription	Right Atrium	heart
10	chr15:72632600-72649600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:72632800-72649400	Strong transcription	Adipose Nuclei	Adipose
12	chr15:72633000-72650400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr15:72633000-72651200	Strong transcription	Thymus	Thymus
14	chr15:72633000-72652000	Strong transcription	Fetal Stomach	stomach
15	chr15:72633400-72649400	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:72633400-72651600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:72633600-72648200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:72633600-72648200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:72633600-72649200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:72633600-72649200	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr15:72633600-72649400	Strong transcription	Fetal Muscle Leg	muscle
22	chr15:72633600-72649400	Strong transcription	Lung	lung
23	chr15:72633600-72650000	Strong transcription	Brain Cingulate Gyrus	brain
24	chr15:72633600-72650400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:72633800-72649400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:72633800-72651200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:72634000-72649200	Strong transcription	Fetal Brain Female	brain
28	chr15:72634000-72649400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:72634000-72649400	Strong transcription	Spleen	Spleen
30	chr15:72634000-72649800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:72634000-72650000	Strong transcription	Liver	Liver
32	chr15:72634000-72650800	Strong transcription	Stomach Smooth Muscle	stomach
33	chr15:72634200-72649200	Strong transcription	Placenta	Placenta
34	chr15:72634200-72649400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:72634200-72649400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:72634400-72650400	Strong transcription	Aorta	Aorta
37	chr15:72634400-72650600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr15:72634600-72650600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:72634800-72649800	Strong transcription	Brain Germinal Matrix	brain
41	chr15:72635400-72651400	Strong transcription	Primary T cells from cord blood	blood
42	chr15:72635600-72649400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:72635600-72650200	Strong transcription	Fetal Thymus	thymus
44	chr15:72635800-72649000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:72635800-72649400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:72635800-72649400	Strong transcription	Ovary	ovary
47	chr15:72635800-72649600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:72635800-72649800	Strong transcription	Brain Anterior Caudate	brain
49	chr15:72635800-72650000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:72635800-72650200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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