Variant report

Variant	rs17841142
Chromosome Location	chr15:72703588-72703589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72691031..72692558-chr15:72702074..72703980,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10152810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10467945	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11857752	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12437909	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12440768	0.97[EUR][1000 genomes]
rs12442850	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12591626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12593434	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16956783	1.00[EUR][1000 genomes]
rs16956788	1.00[EUR][1000 genomes]
rs16956884	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16956890	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16956917	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1800428	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1816645	0.86[AFR][1000 genomes]
rs35778233	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784586	1.00[EUR][1000 genomes]
rs4556749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4777504	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777505	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4777506	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4777507	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7174287	0.93[EUR][1000 genomes]
rs9806258	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72703200-72704000	Enhancers	Placenta	Placenta

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