Variant report

Variant	rs1816645
Chromosome Location	chr15:72707991-72707992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10152810	0.94[LWK][hapmap];0.81[MEX][hapmap];0.85[AFR][1000 genomes]
rs10220917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11072372	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12324592	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12439127	1.00[ASN][1000 genomes]
rs12591626	0.86[AFR][1000 genomes]
rs12903882	1.00[ASN][1000 genomes]
rs13379855	1.00[ASN][1000 genomes]
rs16953788	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956667	1.00[ASN][1000 genomes]
rs16956675	1.00[ASN][1000 genomes]
rs16956759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16956826	1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956904	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap]
rs16956917	0.88[LWK][hapmap];0.81[MEX][hapmap];0.86[AFR][1000 genomes]
rs16957154	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957161	1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957189	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17841142	0.86[AFR][1000 genomes]
rs1963894	1.00[ASN][1000 genomes]
rs28393893	1.00[ASN][1000 genomes]
rs28408413	1.00[ASN][1000 genomes]
rs28422889	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28435710	1.00[ASN][1000 genomes]
rs28439115	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28453701	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28471053	1.00[ASN][1000 genomes]
rs28488862	1.00[ASN][1000 genomes]
rs28493570	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28534054	1.00[ASN][1000 genomes]
rs28541481	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28602765	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28661594	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28795465	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28832330	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28853391	0.82[AMR][1000 genomes]
rs2912208	1.00[ASN][1000 genomes]
rs2912209	1.00[ASN][1000 genomes]
rs2912211	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2912212	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2912213	1.00[ASN][1000 genomes]
rs2959936	1.00[ASN][1000 genomes]
rs2959942	1.00[ASN][1000 genomes]
rs35293819	1.00[ASN][1000 genomes]
rs4556749	0.88[LWK][hapmap];0.81[MEX][hapmap];0.86[AFR][1000 genomes]
rs4777516	1.00[ASN][1000 genomes]
rs6495002	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72735194	1.00[ASN][1000 genomes]
rs73440555	1.00[ASN][1000 genomes]
rs73440562	1.00[ASN][1000 genomes]
rs73440566	1.00[ASN][1000 genomes]
rs73440586	1.00[ASN][1000 genomes]
rs73442510	1.00[ASN][1000 genomes]
rs8039489	1.00[ASN][1000 genomes]
rs8192349	1.00[ASN][1000 genomes]
rs8192419	1.00[ASN][1000 genomes]
rs8192422	1.00[ASN][1000 genomes]
rs9806212	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806374	1.00[CHB][hapmap];0.89[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9944261	1.00[CHB][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs998225	1.00[CHB][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	esv3385861	chr15:72704967-72708957	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72707200-72708000	Enhancers	HepG2	liver

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