Variant report

Variant	rs28853391
Chromosome Location	chr15:72907311-72907312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72902749..72904862-chr15:72907077..72909807,2	K562	blood:

Variant related genes	Relation type
ENSG00000243790	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16953788	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957154	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1808495	1.00[ASN][1000 genomes]
rs1816645	0.82[AMR][1000 genomes]
rs28422889	0.85[AMR][1000 genomes]
rs28437631	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28439115	1.00[EUR][1000 genomes]
rs28453701	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493570	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28541481	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602765	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661594	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28795465	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28832330	0.82[AMR][1000 genomes]
rs9806258	0.82[AMR][1000 genomes]
rs9944261	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs998225	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv977732	chr15:72897457-72963802	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3510859	chr15:72898800-72949834	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3510860	chr15:72898800-72949834	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
3	chr15:72876800-72907600	Weak transcription	Lung	lung
4	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
6	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:72888000-72908200	Weak transcription	Right Ventricle	heart
8	chr15:72894600-72909000	Weak transcription	HSMMtube	muscle
9	chr15:72898400-72910600	Weak transcription	Esophagus	oesophagus
10	chr15:72899200-72907600	Weak transcription	Right Atrium	heart
11	chr15:72899800-72908000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:72900400-72908400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:72902200-72907800	Weak transcription	Pancreas	Pancrea
14	chr15:72902600-72908400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:72907000-72907400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr15:72907000-72907800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:72907000-72909400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:72907000-72909400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:72907200-72907800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr15:72907200-72907800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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