Variant report

Variant	rs28437631
Chromosome Location	chr15:72963705-72963706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72961997..72964036-chr15:72977939..72979769,2	MCF-7	breast:
2	chr15:72891911..72892848-chr15:72962933..72963848,3	MCF-7	breast:
3	chr15:72961874..72963830-chr15:72977494..72979926,2	K562	blood:

Variant related genes	Relation type
ENSG00000175202	Chromatin interaction
ENSG00000140463	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11072372	1.00[CHB][hapmap]
rs12441929	0.81[MEX][hapmap]
rs16953788	1.00[EUR][1000 genomes]
rs16957154	1.00[EUR][1000 genomes]
rs16957161	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16957189	1.00[CHB][hapmap]
rs28439115	1.00[EUR][1000 genomes]
rs28453701	1.00[EUR][1000 genomes]
rs28493570	1.00[EUR][1000 genomes]
rs28541481	1.00[EUR][1000 genomes]
rs28602765	1.00[EUR][1000 genomes]
rs28661594	1.00[EUR][1000 genomes]
rs28795465	1.00[EUR][1000 genomes]
rs28853391	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9944261	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs998225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv977732	chr15:72897457-72963802	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv19973	chr15:72921261-72966130	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv821020	chr15:72921261-72966130	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3413840	chr15:72943198-72964297	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72963000-72964200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:72963200-72963800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:72963200-72963800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:72963200-72963800	Enhancers	Primary T cells from cord blood	blood
5	chr15:72963200-72963800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:72963200-72963800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr15:72963200-72963800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:72963200-72963800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:72963200-72963800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:72963200-72963800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:72963200-72963800	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr15:72963200-72963800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:72963200-72963800	Enhancers	Esophagus	oesophagus
14	chr15:72963200-72963800	Enhancers	Fetal Intestine Large	intestine
15	chr15:72963200-72963800	Enhancers	Psoas Muscle	Psoas
16	chr15:72963200-72963800	Enhancers	Right Atrium	heart
17	chr15:72963200-72963800	Enhancers	Right Ventricle	heart
18	chr15:72963200-72963800	Enhancers	GM12878-XiMat	blood
19	chr15:72963200-72964000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr15:72963200-72964000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:72963200-72964200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:72963200-72964200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:72963200-72964400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr15:72963400-72963800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
25	chr15:72963400-72963800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr15:72963400-72963800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:72963400-72963800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:72963400-72963800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:72963400-72963800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr15:72963400-72963800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
31	chr15:72963400-72963800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:72963400-72963800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
33	chr15:72963400-72963800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr15:72963400-72963800	Enhancers	Fetal Heart	heart
35	chr15:72963400-72963800	Bivalent Enhancer	Fetal Muscle Leg	muscle
36	chr15:72963400-72963800	Enhancers	Lung	lung
37	chr15:72963400-72963800	Enhancers	Pancreas	Pancrea
38	chr15:72963400-72963800	Enhancers	Small Intestine	intestine
39	chr15:72963400-72963800	Enhancers	Spleen	Spleen
40	chr15:72963400-72963800	Flanking Active TSS	A549	lung
41	chr15:72963400-72963800	Flanking Active TSS	Hela-S3	cervix
42	chr15:72963400-72963800	Enhancers	HMEC	breast
43	chr15:72963400-72963800	Enhancers	NHLF	lung
44	chr15:72963400-72964000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
45	chr15:72963400-72964000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:72963400-72964200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr15:72963400-72964200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr15:72963400-72964400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr15:72963400-72964400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr15:72963400-72964400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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