Variant report

Variant	rs11072372
Chromosome Location	chr15:72783501-72783502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72765013..72768991-chr15:72777549..72785933,11	MCF-7	breast:
2	chr15:72779498..72781540-chr15:72782619..72785012,4	K562	blood:
3	chr15:72767452..72769709-chr15:72782732..72785148,2	K562	blood:
4	chr15:72779498..72781134-chr15:72782619..72784386,3	K562	blood:
5	chr15:72774175..72776020-chr15:72783050..72785944,2	MCF-7	breast:
6	chr15:72773245..72779445-chr15:72780758..72788014,8	K562	blood:
7	chr15:72765591..72767580-chr15:72783161..72786899,5	K562	blood:

Variant related genes	Relation type
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10220917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10438370	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518988	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10851858	0.85[MEX][hapmap]
rs11072368	0.81[AFR][1000 genomes]
rs11072376	0.80[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1133316	0.85[MEX][hapmap];0.83[AMR][1000 genomes]
rs11638897	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324592	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12439127	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900846	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12901966	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12903882	1.00[ASN][1000 genomes]
rs12909168	0.86[AFR][1000 genomes]
rs13379855	1.00[ASN][1000 genomes]
rs16953788	1.00[ASN][1000 genomes]
rs16956667	1.00[ASN][1000 genomes]
rs16956675	1.00[ASN][1000 genomes]
rs16956759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16956826	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16956904	1.00[CHB][hapmap]
rs16956956	0.82[EUR][1000 genomes]
rs16957064	0.90[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16957095	0.82[EUR][1000 genomes]
rs16957154	1.00[ASN][1000 genomes]
rs16957161	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16957189	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1812842	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1816645	1.00[ASN][1000 genomes]
rs1963894	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415135	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2415136	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2415137	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2415141	0.85[MEX][hapmap]
rs28393893	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408413	1.00[ASN][1000 genomes]
rs28422889	1.00[ASN][1000 genomes]
rs28435710	1.00[ASN][1000 genomes]
rs28437631	1.00[CHB][hapmap]
rs28439115	1.00[ASN][1000 genomes]
rs28453701	1.00[ASN][1000 genomes]
rs28471053	1.00[ASN][1000 genomes]
rs28488862	1.00[ASN][1000 genomes]
rs28493570	1.00[ASN][1000 genomes]
rs28534054	1.00[ASN][1000 genomes]
rs28541481	1.00[ASN][1000 genomes]
rs28602765	1.00[ASN][1000 genomes]
rs28661594	1.00[ASN][1000 genomes]
rs28795465	1.00[ASN][1000 genomes]
rs28832330	1.00[ASN][1000 genomes]
rs2912208	1.00[ASN][1000 genomes]
rs2912209	1.00[ASN][1000 genomes]
rs2912211	1.00[ASN][1000 genomes]
rs2912212	1.00[ASN][1000 genomes]
rs2912213	1.00[ASN][1000 genomes]
rs2959936	1.00[ASN][1000 genomes]
rs2959942	1.00[ASN][1000 genomes]
rs35293819	1.00[ASN][1000 genomes]
rs3842946	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4146286	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776602	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4776603	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4777512	0.81[AMR][1000 genomes]
rs4777514	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4777516	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777517	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60702445	0.82[EUR][1000 genomes]
rs6495002	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7162856	0.82[EUR][1000 genomes]
rs7174825	0.81[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap]
rs7175376	0.90[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs7177472	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72735137	0.82[EUR][1000 genomes]
rs72735139	0.82[EUR][1000 genomes]
rs72735141	0.82[EUR][1000 genomes]
rs72735156	0.82[EUR][1000 genomes]
rs72735160	0.82[EUR][1000 genomes]
rs72735166	0.82[EUR][1000 genomes]
rs72735170	0.82[EUR][1000 genomes]
rs72735194	1.00[ASN][1000 genomes]
rs73440555	1.00[ASN][1000 genomes]
rs73440562	1.00[ASN][1000 genomes]
rs73440566	1.00[ASN][1000 genomes]
rs73440586	1.00[ASN][1000 genomes]
rs73442510	1.00[ASN][1000 genomes]
rs8024715	0.90[CEU][hapmap]
rs8025088	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8026681	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037282	1.00[CEU][hapmap];0.85[GIH][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8038734	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8039489	1.00[ASN][1000 genomes]
rs9806212	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9806258	1.00[ASN][1000 genomes]
rs9806374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9944261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs998225	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72768400-72785400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:72768400-72793400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72769200-72792000	Weak transcription	Fetal Kidney	kidney
4	chr15:72769600-72797000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:72769800-72805200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:72770000-72786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:72770200-72788600	Weak transcription	Brain Germinal Matrix	brain
9	chr15:72771400-72792000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:72771600-72826000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:72772000-72792000	Weak transcription	Placenta	Placenta
12	chr15:72772200-72791800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:72772200-72794000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:72772400-72791600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:72772600-72820800	Weak transcription	Thymus	Thymus
16	chr15:72773000-72817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:72773000-72819600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:72774000-72785000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:72774000-72796000	Weak transcription	Fetal Stomach	stomach
20	chr15:72774200-72784000	Weak transcription	Brain Substantia Nigra	brain
21	chr15:72774200-72786600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:72774200-72794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:72775600-72788400	Weak transcription	Aorta	Aorta
24	chr15:72775600-72832800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:72775800-72785200	Weak transcription	Brain Angular Gyrus	brain
26	chr15:72775800-72788400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:72775800-72796000	Weak transcription	Esophagus	oesophagus
28	chr15:72776000-72792000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:72777400-72786000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:72777400-72790000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:72777600-72783600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr15:72777800-72792000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:72778600-72786600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:72779400-72787200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:72779600-72785800	Enhancers	Adipose Nuclei	Adipose
36	chr15:72779800-72786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:72780000-72783600	Weak transcription	HUVEC	blood vessel
38	chr15:72780000-72783800	Weak transcription	NHDF-Ad	bronchial
39	chr15:72780000-72784800	Weak transcription	Stomach Mucosa	stomach
40	chr15:72780000-72786400	Weak transcription	Fetal Heart	heart
41	chr15:72780000-72794400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:72780200-72784200	Weak transcription	HSMMtube	muscle
43	chr15:72780400-72783600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr15:72780400-72783800	Weak transcription	NH-A	brain
45	chr15:72780400-72784000	Weak transcription	HMEC	breast
46	chr15:72780400-72784000	Weak transcription	NHLF	lung
47	chr15:72780400-72812400	Weak transcription	HepG2	liver
48	chr15:72780800-72783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:72780800-72785400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr15:72780800-72790000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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