Variant report

Variant	rs2415137
Chromosome Location	chr15:72738293-72738294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr15:72738283-72738609	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000271072	TF binding region

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10438370	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851858	0.81[ASW][hapmap];0.85[MEX][hapmap]
rs11072365	0.83[AMR][1000 genomes]
rs11072372	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11072376	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1133316	0.87[ASW][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap]
rs11631125	0.83[AMR][1000 genomes]
rs11638897	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855682	0.83[AMR][1000 genomes]
rs12439018	1.00[YRI][hapmap]
rs12439127	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12900846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901966	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908610	0.83[AMR][1000 genomes]
rs16956866	0.88[JPT][hapmap]
rs16956899	0.88[JPT][hapmap]
rs16956956	0.82[EUR][1000 genomes]
rs16956988	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16957064	0.90[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16957095	0.82[EUR][1000 genomes]
rs16957189	0.90[CEU][hapmap]
rs1812842	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963894	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1972692	1.00[CHB][hapmap]
rs2009365	1.00[CHB][hapmap]
rs2162236	1.00[CHB][hapmap]
rs2278694	0.93[ASW][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs2415135	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415139	0.84[AMR][1000 genomes]
rs2415141	0.94[ASW][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.88[YRI][hapmap]
rs28393893	0.89[EUR][1000 genomes]
rs28429820	0.83[ASN][1000 genomes]
rs28607101	0.83[ASN][1000 genomes]
rs3743230	0.88[JPT][hapmap]
rs3842946	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776602	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776603	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777512	0.81[AMR][1000 genomes]
rs4777514	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777516	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4777517	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57155740	0.91[ASN][1000 genomes]
rs57769940	0.83[ASN][1000 genomes]
rs58110372	0.91[ASN][1000 genomes]
rs59029026	0.83[ASN][1000 genomes]
rs60106752	0.91[ASN][1000 genomes]
rs60207997	0.91[ASN][1000 genomes]
rs60702445	0.82[EUR][1000 genomes]
rs6494999	1.00[CHB][hapmap]
rs7162856	0.82[EUR][1000 genomes]
rs7174307	0.91[ASN][1000 genomes]
rs7174825	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs7175376	0.90[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs7175437	0.91[ASN][1000 genomes]
rs7177472	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735137	0.82[EUR][1000 genomes]
rs72735139	0.82[EUR][1000 genomes]
rs72735141	0.82[EUR][1000 genomes]
rs72735156	0.82[EUR][1000 genomes]
rs72735160	0.82[EUR][1000 genomes]
rs72735166	0.82[EUR][1000 genomes]
rs72735170	0.82[EUR][1000 genomes]
rs73442591	0.91[ASN][1000 genomes]
rs73442595	0.91[ASN][1000 genomes]
rs73444703	0.91[ASN][1000 genomes]
rs73444714	0.91[ASN][1000 genomes]
rs73444720	0.91[ASN][1000 genomes]
rs73444723	0.91[ASN][1000 genomes]
rs73444736	0.91[ASN][1000 genomes]
rs73444755	0.91[ASN][1000 genomes]
rs73444759	0.91[ASN][1000 genomes]
rs73444761	0.91[ASN][1000 genomes]
rs73444773	0.91[ASN][1000 genomes]
rs73444774	0.91[ASN][1000 genomes]
rs73444791	0.91[ASN][1000 genomes]
rs73444794	0.91[ASN][1000 genomes]
rs73444798	0.91[ASN][1000 genomes]
rs73444802	0.91[ASN][1000 genomes]
rs73446604	0.91[ASN][1000 genomes]
rs7496556	0.81[ASW][hapmap]
rs8024715	0.90[CEU][hapmap]
rs8025088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026681	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030499	0.81[ASW][hapmap]
rs8035007	0.91[ASN][1000 genomes]
rs8037282	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.84[MKK][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038734	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv976949	chr15:72737860-72743854	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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