Variant report

Variant	rs73444703
Chromosome Location	chr15:72753978-72753979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72750881..72760234-chr15:72764528..72769120,23	MCF-7	breast:
2	chr15:72750883..72754217-chr15:72765206..72768543,4	K562	blood:
3	chr15:72746883..72750315-chr15:72753008..72756408,4	K562	blood:
4	chr15:72747769..72750315-chr15:72752830..72755638,3	K562	blood:
5	chr15:72752844..72754685-chr15:72755428..72758957,3	MCF-7	breast:
6	chr15:72750207..72758265-chr15:72764578..72767350,10	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARIH1-3	chr15:72752494-72755034	NONHSAT047091
2	lnc-HEXA-6	chr15:72753336-72754991	NONHSAT047092

No data

Variant related genes	Relation type
ENSG00000261187	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10438370	0.91[ASN][1000 genomes]
rs10518988	0.91[ASN][1000 genomes]
rs11072376	0.91[ASN][1000 genomes]
rs11638897	0.91[ASN][1000 genomes]
rs12900846	0.91[ASN][1000 genomes]
rs12901966	0.91[ASN][1000 genomes]
rs12916097	0.92[AFR][1000 genomes]
rs16956866	0.82[ASN][1000 genomes]
rs16956899	0.82[ASN][1000 genomes]
rs16956988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812842	0.91[ASN][1000 genomes]
rs2415135	0.91[ASN][1000 genomes]
rs2415136	0.84[ASN][1000 genomes]
rs2415137	0.91[ASN][1000 genomes]
rs3743230	0.82[ASN][1000 genomes]
rs3842946	0.91[ASN][1000 genomes]
rs4146286	0.91[ASN][1000 genomes]
rs4776602	0.91[ASN][1000 genomes]
rs4776603	0.91[ASN][1000 genomes]
rs4777514	0.91[ASN][1000 genomes]
rs57155740	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57769940	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58110372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59029026	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59751560	1.00[AMR][1000 genomes]
rs60106752	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60207997	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60466172	1.00[AMR][1000 genomes]
rs60920713	1.00[AMR][1000 genomes]
rs7174307	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7175437	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7177472	0.91[ASN][1000 genomes]
rs73442536	0.82[ASN][1000 genomes]
rs73442539	0.82[ASN][1000 genomes]
rs73442560	0.82[ASN][1000 genomes]
rs73442591	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444720	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444723	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444736	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444755	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444759	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444761	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444773	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444774	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444791	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444794	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444798	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444802	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446604	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446615	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446634	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8025088	0.91[ASN][1000 genomes]
rs8026681	0.91[ASN][1000 genomes]
rs8035007	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8036623	1.00[AMR][1000 genomes]
rs8036629	1.00[AMR][1000 genomes]
rs8037282	0.91[ASN][1000 genomes]
rs8038734	0.91[ASN][1000 genomes]
rs8039365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72752200-72754200	Weak transcription	Aorta	Aorta
2	chr15:72753600-72754000	Weak transcription	NHEK	skin
3	chr15:72753800-72754000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:72753800-72754000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:72753800-72754000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr15:72753800-72754000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr15:72753800-72754000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:72753800-72754000	Enhancers	Adipose Nuclei	Adipose
9	chr15:72753800-72754000	Enhancers	Liver	Liver
10	chr15:72753800-72754000	Enhancers	Brain Angular Gyrus	brain
11	chr15:72753800-72754000	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:72753800-72754000	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:72753800-72754000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:72753800-72754000	Flanking Active TSS	GM12878-XiMat	blood
15	chr15:72753800-72754000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr15:72753800-72754000	Flanking Active TSS	NHLF	lung
17	chr15:72753800-72754000	Enhancers	Osteobl	bone
18	chr15:72753800-72754200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr15:72753800-72754200	Enhancers	Primary B cells from peripheral blood	blood
20	chr15:72753800-72754200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:72753800-72754200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr15:72753800-72754200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:72753800-72754200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr15:72753800-72754200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:72753800-72754200	Enhancers	Dnd41	blood
26	chr15:72753800-72754200	Enhancers	HepG2	liver
27	chr15:72753800-72754200	Enhancers	NHDF-Ad	bronchial
28	chr15:72753800-72754400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr15:72753800-72754600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr15:72753800-72755000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:72753800-72755000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:72753800-72755000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:72753800-72755000	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr15:72753800-72755000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:72753800-72755000	Active TSS	Right Atrium	heart
36	chr15:72753800-72755000	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links