Variant report

Variant	rs59751560
Chromosome Location	chr15:72600729-72600730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72599410..72601357-chr15:72604613..72606396,2	MCF-7	breast:
2	chr15:72562781..72564885-chr15:72599473..72602023,2	MCF-7	breast:
3	chr15:72597301..72600111-chr15:72600554..72602368,4	MCF-7	breast:
4	chr15:72564706..72566745-chr15:72598121..72601390,3	K562	blood:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction
ENSG00000140488	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16956988	1.00[AMR][1000 genomes]
rs57155740	1.00[AMR][1000 genomes]
rs57769940	1.00[AMR][1000 genomes]
rs58110372	1.00[AMR][1000 genomes]
rs59029026	1.00[AMR][1000 genomes]
rs60106752	1.00[AMR][1000 genomes]
rs60207997	1.00[AMR][1000 genomes]
rs60466172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60920713	1.00[AMR][1000 genomes]
rs7174307	1.00[AMR][1000 genomes]
rs7175437	1.00[AMR][1000 genomes]
rs73442591	1.00[AMR][1000 genomes]
rs73442595	1.00[AMR][1000 genomes]
rs73444703	1.00[AMR][1000 genomes]
rs73444714	1.00[AMR][1000 genomes]
rs73444720	1.00[AMR][1000 genomes]
rs73444723	1.00[AMR][1000 genomes]
rs73444736	1.00[AMR][1000 genomes]
rs73444755	1.00[AMR][1000 genomes]
rs73444759	1.00[AMR][1000 genomes]
rs73444761	1.00[AMR][1000 genomes]
rs73444773	1.00[AMR][1000 genomes]
rs73444774	1.00[AMR][1000 genomes]
rs73444791	1.00[AMR][1000 genomes]
rs73444794	1.00[AMR][1000 genomes]
rs8035007	1.00[AMR][1000 genomes]
rs8039365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
2	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72573200-72603000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:72578000-72611800	Weak transcription	Ovary	ovary
5	chr15:72579600-72602400	Weak transcription	Primary T cells from cord blood	blood
6	chr15:72582000-72608000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:72582000-72611800	Weak transcription	Spleen	Spleen
8	chr15:72583800-72611600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:72590200-72604800	Weak transcription	Aorta	Aorta
10	chr15:72590600-72607600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:72590800-72602000	Weak transcription	Left Ventricle	heart
12	chr15:72595400-72604600	Weak transcription	Lung	lung
13	chr15:72596000-72612400	Weak transcription	Adipose Nuclei	Adipose
14	chr15:72597600-72605800	Weak transcription	Fetal Intestine Small	intestine
15	chr15:72599200-72611400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:72599200-72611600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:72599400-72610800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:72600000-72610400	Weak transcription	Brain Angular Gyrus	brain
19	chr15:72600000-72611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:72600200-72606400	Weak transcription	Brain Anterior Caudate	brain
21	chr15:72600200-72607800	Weak transcription	Fetal Brain Female	brain
22	chr15:72600400-72604200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links