Variant report

Variant	rs73444714
Chromosome Location	chr15:72777827-72777828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72770833..72775652-chr15:72776654..72780093,7	K562	blood:
2	chr15:72765013..72768991-chr15:72777549..72785933,11	MCF-7	breast:
3	chr15:72773245..72779445-chr15:72780758..72788014,8	K562	blood:
4	chr15:72770687..72773581-chr15:72777521..72779996,2	MCF-7	breast:
5	chr15:72770264..72772292-chr15:72776919..72779062,2	K562	blood:
6	chr15:72766230..72769922-chr15:72777601..72781240,5	K562	blood:
7	chr15:72777447..72780290-chr15:72783902..72787727,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10438370	0.91[ASN][1000 genomes]
rs10518988	0.91[ASN][1000 genomes]
rs11072376	0.91[ASN][1000 genomes]
rs11638897	0.91[ASN][1000 genomes]
rs12900846	0.91[ASN][1000 genomes]
rs12901966	0.91[ASN][1000 genomes]
rs12916097	1.00[AFR][1000 genomes]
rs16956866	0.82[ASN][1000 genomes]
rs16956899	0.82[ASN][1000 genomes]
rs16956988	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812842	0.91[ASN][1000 genomes]
rs2415135	0.91[ASN][1000 genomes]
rs2415136	0.84[ASN][1000 genomes]
rs2415137	0.91[ASN][1000 genomes]
rs3743230	0.82[ASN][1000 genomes]
rs3842946	0.91[ASN][1000 genomes]
rs4146286	0.91[ASN][1000 genomes]
rs4776602	0.91[ASN][1000 genomes]
rs4776603	0.91[ASN][1000 genomes]
rs4777514	0.91[ASN][1000 genomes]
rs57155740	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57769940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58110372	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59029026	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59751560	1.00[AMR][1000 genomes]
rs60106752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60207997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60466172	1.00[AMR][1000 genomes]
rs60920713	1.00[AMR][1000 genomes]
rs7174307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7175437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7177472	0.91[ASN][1000 genomes]
rs73442536	0.82[ASN][1000 genomes]
rs73442539	0.82[ASN][1000 genomes]
rs73442560	0.82[ASN][1000 genomes]
rs73442591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444703	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444736	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444802	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446604	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446615	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446634	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8025088	0.91[ASN][1000 genomes]
rs8026681	0.91[ASN][1000 genomes]
rs8035007	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8036623	1.00[AMR][1000 genomes]
rs8036629	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037282	0.91[ASN][1000 genomes]
rs8038734	0.91[ASN][1000 genomes]
rs8039365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72768400-72785400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:72768400-72793400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72769200-72778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:72769200-72779200	Weak transcription	NHLF	lung
5	chr15:72769200-72792000	Weak transcription	Fetal Kidney	kidney
6	chr15:72769600-72779600	Weak transcription	Stomach Mucosa	stomach
7	chr15:72769600-72779600	Weak transcription	HSMMtube	muscle
8	chr15:72769600-72797000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:72769800-72782800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:72769800-72805200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:72770000-72778400	Weak transcription	NH-A	brain
13	chr15:72770000-72786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:72770200-72788600	Weak transcription	Brain Germinal Matrix	brain
15	chr15:72770400-72779400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:72770400-72780000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:72770400-72782600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:72771000-72781200	Weak transcription	Fetal Intestine Large	intestine
19	chr15:72771200-72778400	Weak transcription	HMEC	breast
20	chr15:72771200-72778800	Weak transcription	Fetal Brain Female	brain
21	chr15:72771200-72780200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:72771400-72779400	Weak transcription	NHDF-Ad	bronchial
23	chr15:72771400-72782800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:72771400-72792000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:72771600-72778000	Weak transcription	Osteobl	bone
26	chr15:72771600-72778800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:72771600-72779800	Weak transcription	HepG2	liver
28	chr15:72771600-72780800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:72771600-72826000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:72771800-72781000	Weak transcription	Fetal Lung	lung
31	chr15:72772000-72778800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:72772000-72779600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:72772000-72781600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:72772000-72782400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:72772000-72792000	Weak transcription	Placenta	Placenta
36	chr15:72772200-72778200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:72772200-72780000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:72772200-72780800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr15:72772200-72781800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:72772200-72791800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:72772200-72794000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr15:72772400-72780800	Weak transcription	Fetal Thymus	thymus
43	chr15:72772400-72791600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:72772600-72781200	Weak transcription	Lung	lung
45	chr15:72772600-72820800	Weak transcription	Thymus	Thymus
46	chr15:72772800-72782200	Weak transcription	Fetal Brain Male	brain
47	chr15:72773000-72817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:72773000-72819600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr15:72773400-72778600	Weak transcription	A549	lung
50	chr15:72773600-72778600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links