Variant report

Variant	rs73444773
Chromosome Location	chr15:72833583-72833584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72824709..72826756-chr15:72830157..72833591,3	K562	blood:
2	chr15:72831411..72834028-chr15:72837250..72840303,3	K562	blood:
3	chr15:72829970..72831698-chr15:72833196..72836146,3	MCF-7	breast:
4	chr15:72823930..72827989-chr15:72833132..72836726,3	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10438370	0.91[ASN][1000 genomes]
rs10518988	0.91[ASN][1000 genomes]
rs11072376	0.91[ASN][1000 genomes]
rs11638897	0.91[ASN][1000 genomes]
rs12900846	0.91[ASN][1000 genomes]
rs12901966	0.91[ASN][1000 genomes]
rs12916097	0.93[AFR][1000 genomes]
rs16956866	0.82[ASN][1000 genomes]
rs16956899	0.82[ASN][1000 genomes]
rs16956988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812842	0.91[ASN][1000 genomes]
rs2415135	0.91[ASN][1000 genomes]
rs2415136	0.84[ASN][1000 genomes]
rs2415137	0.91[ASN][1000 genomes]
rs3743230	0.82[ASN][1000 genomes]
rs3842946	0.91[ASN][1000 genomes]
rs4146286	0.91[ASN][1000 genomes]
rs4776602	0.91[ASN][1000 genomes]
rs4776603	0.91[ASN][1000 genomes]
rs4777514	0.91[ASN][1000 genomes]
rs57155740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57769940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58110372	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59029026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59751560	1.00[AMR][1000 genomes]
rs60106752	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60207997	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60466172	1.00[AMR][1000 genomes]
rs60920713	1.00[AMR][1000 genomes]
rs7174307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7175437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7177472	0.91[ASN][1000 genomes]
rs73442536	0.82[ASN][1000 genomes]
rs73442539	0.82[ASN][1000 genomes]
rs73442560	0.82[ASN][1000 genomes]
rs73442591	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442595	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444703	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444736	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444798	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8025088	0.91[ASN][1000 genomes]
rs8026681	0.91[ASN][1000 genomes]
rs8035007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8036623	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036629	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037282	0.91[ASN][1000 genomes]
rs8038734	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1054626	chr15:72811402-72867502	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv569948	chr15:72811402-72878772	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
11	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
12	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
2	chr15:72805600-72848200	Weak transcription	Fetal Brain Male	brain
3	chr15:72806600-72846800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:72809000-72855400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:72814400-72847000	Weak transcription	Ovary	ovary
6	chr15:72814800-72859200	Weak transcription	Brain Angular Gyrus	brain
7	chr15:72815600-72837200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72815600-72838200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:72815800-72837200	Weak transcription	HepG2	liver
10	chr15:72818200-72837200	Weak transcription	A549	lung
11	chr15:72819600-72837000	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:72826200-72840200	Weak transcription	Hela-S3	cervix
13	chr15:72826800-72837000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:72826800-72837200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:72827200-72837600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:72827800-72846800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:72828000-72837000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:72828600-72869800	Weak transcription	Aorta	Aorta
19	chr15:72829200-72837200	Weak transcription	Small Intestine	intestine
20	chr15:72829200-72880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr15:72829400-72837000	Weak transcription	Primary T cells from cord blood	blood
22	chr15:72829600-72837000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:72829600-72837200	Weak transcription	NH-A	brain
24	chr15:72829800-72837400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:72830200-72846800	Weak transcription	Brain Anterior Caudate	brain
26	chr15:72830400-72833800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr15:72830400-72840200	Weak transcription	NHLF	lung
28	chr15:72830400-72866800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:72830600-72833600	ZNF genes & repeats	Dnd41	blood
30	chr15:72830800-72867400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:72831000-72854600	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:72831200-72833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr15:72831200-72833800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr15:72831200-72834400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:72831400-72833800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr15:72831400-72833800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:72831400-72834400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:72831400-72848400	Weak transcription	Brain Substantia Nigra	brain
39	chr15:72831600-72837200	Weak transcription	HSMM	muscle
40	chr15:72831800-72834400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:72832000-72837200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:72832200-72834400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:72832800-72833600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:72832800-72833600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr15:72832800-72833600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr15:72832800-72833600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
47	chr15:72832800-72833600	ZNF genes & repeats	Fetal Lung	lung
48	chr15:72832800-72833800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:72832800-72833800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:72832800-72833800	ZNF genes & repeats	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links