Variant report

Variant	rs12900846
Chromosome Location	chr15:72851505-72851506
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72490633..72493001-chr15:72850995..72852624,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10438370	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851858	0.81[AMR][1000 genomes]
rs11072372	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11072376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1133316	0.81[AMR][1000 genomes]
rs11637103	0.85[AMR][1000 genomes]
rs11638897	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439018	0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12439127	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12901966	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910393	0.82[AMR][1000 genomes]
rs12917453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1374092	0.85[AMR][1000 genomes]
rs1562250	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16956866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16957064	0.89[CEU][hapmap]
rs16957189	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1808495	0.85[EUR][1000 genomes]
rs1812842	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963894	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1972692	1.00[CHB][hapmap]
rs2278694	0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2415135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415136	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415137	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415141	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28393893	0.82[EUR][1000 genomes]
rs28429820	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28435710	0.82[EUR][1000 genomes]
rs28607101	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3743230	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3842946	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146286	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776601	0.85[AMR][1000 genomes]
rs4776602	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776603	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777514	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777516	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57155740	0.91[ASN][1000 genomes]
rs57769940	0.83[ASN][1000 genomes]
rs58110372	0.91[ASN][1000 genomes]
rs59029026	0.83[ASN][1000 genomes]
rs60106752	0.91[ASN][1000 genomes]
rs60207997	0.91[ASN][1000 genomes]
rs6495011	0.81[AMR][1000 genomes]
rs7174307	0.91[ASN][1000 genomes]
rs7174825	0.89[CEU][hapmap]
rs7175376	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7175437	0.91[ASN][1000 genomes]
rs7177472	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735173	0.82[EUR][1000 genomes]
rs72735181	0.82[EUR][1000 genomes]
rs72735194	0.82[EUR][1000 genomes]
rs73442591	0.91[ASN][1000 genomes]
rs73442595	0.91[ASN][1000 genomes]
rs73444703	0.91[ASN][1000 genomes]
rs73444714	0.91[ASN][1000 genomes]
rs73444720	0.91[ASN][1000 genomes]
rs73444723	0.91[ASN][1000 genomes]
rs73444736	0.91[ASN][1000 genomes]
rs73444755	0.91[ASN][1000 genomes]
rs73444759	0.91[ASN][1000 genomes]
rs73444761	0.91[ASN][1000 genomes]
rs73444773	0.91[ASN][1000 genomes]
rs73444774	0.91[ASN][1000 genomes]
rs73444791	0.91[ASN][1000 genomes]
rs73444794	0.91[ASN][1000 genomes]
rs73444798	0.91[ASN][1000 genomes]
rs73444802	0.91[ASN][1000 genomes]
rs73446604	0.91[ASN][1000 genomes]
rs8024715	0.89[CEU][hapmap]
rs8025088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035007	0.91[ASN][1000 genomes]
rs8037282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038734	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038934	0.80[AFR][1000 genomes]
rs962407	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1054626	chr15:72811402-72867502	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv569948	chr15:72811402-72878772	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
9	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
10	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
11	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
12	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
2	chr15:72809000-72855400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:72814800-72859200	Weak transcription	Brain Angular Gyrus	brain
4	chr15:72828600-72869800	Weak transcription	Aorta	Aorta
5	chr15:72829200-72880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:72830400-72866800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:72830800-72867400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:72831000-72854600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:72833400-72858600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:72833600-72854000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:72833600-72854400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:72833600-72855400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:72833600-72855600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:72833600-72865000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:72833600-72867000	Weak transcription	Right Ventricle	heart
16	chr15:72833600-72870200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:72833600-72870400	Weak transcription	Gastric	stomach
18	chr15:72833800-72856000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:72834800-72858600	Weak transcription	Psoas Muscle	Psoas
20	chr15:72835200-72876000	Weak transcription	Pancreas	Pancrea
21	chr15:72835600-72870400	Weak transcription	Spleen	Spleen
22	chr15:72836600-72870000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:72838600-72855400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:72838600-72862400	Weak transcription	Fetal Heart	heart
25	chr15:72838800-72870400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:72839400-72866600	Weak transcription	Lung	lung
27	chr15:72839800-72857000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:72840800-72854400	Weak transcription	NHLF	lung
29	chr15:72841000-72854400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:72844400-72870000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:72844600-72870400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:72845200-72858400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:72845400-72856800	Weak transcription	Small Intestine	intestine
35	chr15:72845600-72851600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr15:72845600-72859000	Strong transcription	Fetal Intestine Large	intestine
37	chr15:72845800-72851600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:72846200-72852400	Strong transcription	Primary B cells from cord blood	blood
39	chr15:72846200-72857600	Strong transcription	Primary T cells from cord blood	blood
40	chr15:72846400-72852400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:72846400-72858800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:72846600-72853400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr15:72846600-72865400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr15:72846600-72868600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:72846600-72878400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:72846800-72852200	Strong transcription	Fetal Thymus	thymus
47	chr15:72846800-72870200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:72847000-72851600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:72847000-72878400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr15:72847200-72852000	Weak transcription	Fetal Muscle Leg	muscle

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