Variant report

Variant	rs11637103
Chromosome Location	chr15:72831384-72831385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72824709..72826756-chr15:72830157..72833591,3	K562	blood:
2	chr15:72829970..72831698-chr15:72833196..72836146,3	MCF-7	breast:
3	chr15:72821404..72823570-chr15:72831025..72833392,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10438370	0.83[AMR][1000 genomes]
rs10744963	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10851858	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072365	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072376	0.83[AMR][1000 genomes]
rs11072379	0.82[AMR][1000 genomes]
rs1133316	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1160608	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631125	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11855682	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12439018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441929	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12900846	0.85[AMR][1000 genomes]
rs12901966	0.83[AMR][1000 genomes]
rs12908610	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12910393	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12912445	0.80[AMR][1000 genomes]
rs12913503	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1374092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1562250	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1963894	0.81[AMR][1000 genomes]
rs2278694	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415135	0.85[AMR][1000 genomes]
rs2415139	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3842946	0.85[AMR][1000 genomes]
rs4146285	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4146286	0.85[AMR][1000 genomes]
rs4776601	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4776602	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4776603	0.83[AMR][1000 genomes]
rs4777512	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4777514	0.83[AMR][1000 genomes]
rs4777516	0.83[AMR][1000 genomes]
rs4777520	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495011	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7167521	0.83[EUR][1000 genomes]
rs7174287	0.80[ASN][1000 genomes]
rs7177472	0.81[AMR][1000 genomes]
rs7496556	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs8026681	0.81[AMR][1000 genomes]
rs8030499	0.80[AMR][1000 genomes]
rs8037282	0.83[AMR][1000 genomes]
rs8038734	0.85[AMR][1000 genomes]
rs8038934	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1054626	chr15:72811402-72867502	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv569948	chr15:72811402-72878772	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
11	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
12	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:72775600-72832800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr15:72793200-72831400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:72794200-72833200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:72794400-72831600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:72796400-72833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:72796400-72833000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
9	chr15:72797000-72833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:72798200-72833000	Weak transcription	Gastric	stomach
11	chr15:72805600-72848200	Weak transcription	Fetal Brain Male	brain
12	chr15:72806400-72831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:72806400-72833000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:72806600-72846800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:72807600-72833000	Weak transcription	Fetal Intestine Large	intestine
16	chr15:72809000-72833000	Weak transcription	Osteobl	bone
17	chr15:72809000-72855400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:72809200-72832800	Weak transcription	Fetal Lung	lung
19	chr15:72809400-72833000	Weak transcription	Adipose Nuclei	Adipose
20	chr15:72809600-72833000	Weak transcription	HSMMtube	muscle
21	chr15:72811400-72833200	Weak transcription	Right Ventricle	heart
22	chr15:72813600-72831400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:72814400-72831800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:72814400-72847000	Weak transcription	Ovary	ovary
25	chr15:72814800-72833000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:72814800-72859200	Weak transcription	Brain Angular Gyrus	brain
27	chr15:72815600-72831800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:72815600-72832800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:72815600-72837200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:72815600-72838200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:72815800-72833000	Weak transcription	Primary B cells from cord blood	blood
32	chr15:72815800-72837200	Weak transcription	HepG2	liver
33	chr15:72816200-72833000	Weak transcription	Fetal Thymus	thymus
34	chr15:72817600-72833000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:72818200-72837200	Weak transcription	A549	lung
36	chr15:72819000-72832800	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:72819000-72832800	Weak transcription	Placenta	Placenta
38	chr15:72819600-72837000	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:72819800-72832800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:72819800-72833200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:72820000-72831400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:72820800-72833200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:72821800-72833000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:72821800-72833000	Weak transcription	Fetal Intestine Small	intestine
45	chr15:72821800-72833000	Weak transcription	Fetal Stomach	stomach
46	chr15:72821800-72833000	Weak transcription	Left Ventricle	heart
47	chr15:72826200-72840200	Weak transcription	Hela-S3	cervix
48	chr15:72826800-72837000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:72826800-72837200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:72827200-72837600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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