Variant report

Variant	rs10744963
Chromosome Location	chr15:72763708-72763709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:72763394-72763917	MCF10A-Er-Src	breast:	n/a	n/a
2	TAL1	chr15:72763681-72763969	K562	blood:	n/a	n/a
3	POLR2A	chr15:72763254-72764027	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr15:72763463-72763736	Hela-S3	cervix:	n/a	n/a
5	TEAD4	chr15:72763546-72763959	K562	blood:	n/a	n/a
6	TEAD4	chr15:72763615-72763925	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HEXA-3	chr15:72761633-72766666	NONHSAT047096

Variant related genes	Relation type
ARIH1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851858	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11072365	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1133316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1160608	0.90[ASN][1000 genomes]
rs11631125	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11637103	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11638897	0.80[AMR][1000 genomes]
rs11855682	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12439018	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12908610	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12910393	0.82[AMR][1000 genomes]
rs12912445	0.82[AMR][1000 genomes]
rs12913503	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1374092	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1562250	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2278694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2415139	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2415141	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4146285	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4776601	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4777512	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4777520	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7174287	0.80[ASN][1000 genomes]
rs8030499	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72754600-72764800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:72754600-72765400	Weak transcription	NHDF-Ad	bronchial
3	chr15:72754800-72765000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:72754800-72765000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:72754800-72765200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:72754800-72765200	Weak transcription	Brain Substantia Nigra	brain
7	chr15:72754800-72765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:72754800-72765400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:72754800-72765400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:72754800-72765400	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:72754800-72765400	Weak transcription	Fetal Lung	lung
12	chr15:72754800-72765400	Weak transcription	Placenta	Placenta
13	chr15:72754800-72765400	Weak transcription	Lung	lung
14	chr15:72754800-72765400	Weak transcription	Right Ventricle	heart
15	chr15:72754800-72765400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:72754800-72765600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:72755000-72764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:72755000-72764600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:72755000-72765000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:72755000-72765000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:72755000-72765000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr15:72755000-72765000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:72755000-72765000	Weak transcription	NHLF	lung
24	chr15:72755000-72765200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:72755000-72765200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:72755000-72765200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:72755000-72765200	Weak transcription	HSMM	muscle
28	chr15:72755000-72765400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72755000-72765400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:72755000-72765400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:72755000-72765400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:72755000-72765400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:72755000-72765600	Weak transcription	Left Ventricle	heart
34	chr15:72755000-72766000	Weak transcription	Ovary	ovary
35	chr15:72755800-72765000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:72757000-72765000	Weak transcription	Adipose Nuclei	Adipose
37	chr15:72757000-72765200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:72758600-72765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:72758800-72764600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:72759200-72765400	Weak transcription	Pancreas	Pancrea
41	chr15:72760200-72764400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:72760400-72765400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr15:72760800-72765200	Weak transcription	Fetal Heart	heart
44	chr15:72761000-72765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:72761000-72766200	Weak transcription	Small Intestine	intestine
46	chr15:72762000-72765400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:72762400-72765400	Weak transcription	Spleen	Spleen
48	chr15:72762600-72765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:72762800-72765400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:72763000-72764800	Enhancers	Fetal Intestine Small	intestine

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