Variant report

Variant	rs4776601
Chromosome Location	chr15:72806425-72806426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72764062..72769819-chr15:72801905..72807319,8	MCF-7	breast:
2	chr15:72803992..72807994-chr15:72821043..72823060,3	K562	blood:
3	chr15:72765001..72767556-chr15:72805653..72807931,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10438370	0.83[AMR][1000 genomes]
rs10744963	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10775206	0.86[AFR][1000 genomes]
rs10851858	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072365	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072376	0.83[AMR][1000 genomes]
rs11072379	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1133316	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1160608	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11631125	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11636825	0.86[AFR][1000 genomes]
rs11637103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11855682	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12439018	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12900846	0.85[AMR][1000 genomes]
rs12901966	0.83[AMR][1000 genomes]
rs12908610	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12910393	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12912445	0.80[AMR][1000 genomes]
rs12913503	0.80[AMR][1000 genomes]
rs1374092	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562250	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963894	0.81[AMR][1000 genomes]
rs2278694	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415135	0.85[AMR][1000 genomes]
rs2415139	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415141	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3842946	0.85[AMR][1000 genomes]
rs4146285	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4146286	0.85[AMR][1000 genomes]
rs4776602	0.83[AMR][1000 genomes]
rs4776603	0.83[AMR][1000 genomes]
rs4777512	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777514	0.83[AMR][1000 genomes]
rs4777516	0.83[AMR][1000 genomes]
rs4777520	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495011	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7167521	0.83[EUR][1000 genomes]
rs7171506	0.82[AFR][1000 genomes]
rs7174287	0.83[ASN][1000 genomes]
rs7177472	0.81[AMR][1000 genomes]
rs7495835	0.83[AFR][1000 genomes]
rs7496556	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7497390	0.86[AFR][1000 genomes]
rs7497793	0.86[AFR][1000 genomes]
rs8026681	0.81[AMR][1000 genomes]
rs8030499	0.80[AMR][1000 genomes]
rs8037282	0.83[AMR][1000 genomes]
rs8038734	0.85[AMR][1000 genomes]
rs8038934	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:72771600-72826000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:72772600-72820800	Weak transcription	Thymus	Thymus
4	chr15:72773000-72817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:72773000-72819600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:72775600-72832800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:72780400-72812400	Weak transcription	HepG2	liver
8	chr15:72782200-72808000	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:72782600-72828400	Weak transcription	K562	blood
10	chr15:72784200-72813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:72784600-72821400	Weak transcription	HUVEC	blood vessel
12	chr15:72785600-72806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:72785800-72808000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:72786000-72807800	Weak transcription	NHEK	skin
15	chr15:72789400-72821600	Weak transcription	Small Intestine	intestine
16	chr15:72790200-72807800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:72790200-72821600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:72790600-72814600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:72792200-72830800	Weak transcription	HSMM	muscle
20	chr15:72792400-72814000	Weak transcription	Fetal Thymus	thymus
21	chr15:72792400-72816000	Weak transcription	Placenta	Placenta
22	chr15:72792400-72817400	Weak transcription	Hela-S3	cervix
23	chr15:72792600-72806800	Weak transcription	Fetal Intestine Large	intestine
24	chr15:72792600-72807000	Weak transcription	Primary B cells from cord blood	blood
25	chr15:72793000-72808000	Weak transcription	Fetal Lung	lung
26	chr15:72793000-72814600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:72793200-72831400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:72793600-72812600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:72793600-72813400	Weak transcription	Dnd41	blood
30	chr15:72794200-72833200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr15:72794400-72831600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:72795200-72826000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:72795800-72807800	Weak transcription	Osteobl	bone
34	chr15:72795800-72812800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:72795800-72814200	Weak transcription	Brain Angular Gyrus	brain
36	chr15:72796000-72806800	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:72796000-72807800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:72796000-72808200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:72796000-72808200	Weak transcription	Stomach Mucosa	stomach
40	chr15:72796400-72833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:72796400-72833000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:72796800-72808000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:72796800-72814000	Weak transcription	Lung	lung
44	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
45	chr15:72797000-72833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:72797200-72807000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:72797200-72808000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:72797200-72808800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr15:72797200-72813200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:72797200-72821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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