Variant report

Variant	rs7496556
Chromosome Location	chr15:72893022-72893023
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:72891799-72893672	A549	lung:	n/a	chr15:72892390-72892406 chr15:72892389-72892407 chr15:72892392-72892400 chr15:72892391-72892412

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72892178..72893980-chr15:72895801..72898683,2	MCF-7	breast:
2	chr15:72890733..72893124-chr15:72895485..72898120,2	K562	blood:

Variant related genes	Relation type
ENSG00000260144	TF binding region
ENSG00000260144	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10775206	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10851858	0.87[ASW][hapmap];0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11072379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1133316	0.93[ASW][hapmap];0.88[MKK][hapmap]
rs11636825	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11637103	0.82[AMR][1000 genomes]
rs12439018	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs12912445	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12915048	0.82[AFR][1000 genomes]
rs1374092	0.82[AMR][1000 genomes]
rs1562250	0.83[AMR][1000 genomes]
rs2278694	0.87[ASW][hapmap];0.83[MKK][hapmap];0.82[AMR][1000 genomes]
rs2415135	0.81[ASW][hapmap]
rs2415141	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs4146285	0.80[AMR][1000 genomes]
rs4776601	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4777512	0.80[AMR][1000 genomes]
rs4777513	0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs4777520	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6495011	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7495802	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7495835	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7496841	0.92[CEU][hapmap]
rs7497390	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7497793	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8030499	0.87[ASW][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72870800-72896400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:72870800-72902200	Weak transcription	Gastric	stomach
4	chr15:72874800-72899800	Weak transcription	Fetal Stomach	stomach
5	chr15:72876200-72903400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
7	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:72876800-72907600	Weak transcription	Lung	lung
9	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
11	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
12	chr15:72881600-72896400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:72888000-72908200	Weak transcription	Right Ventricle	heart
15	chr15:72892600-72903600	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:72893000-72895200	Weak transcription	Liver	Liver

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