Variant report

Variant	rs1374092
Chromosome Location	chr15:72808428-72808429
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72807734..72811960-chr15:72820715..72823953,3	K562	blood:
2	chr15:72634874..72635767-chr15:72808220..72808792,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10438370	0.83[AMR][1000 genomes]
rs10744963	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10851858	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072365	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072376	0.83[AMR][1000 genomes]
rs11072379	0.82[AMR][1000 genomes]
rs1133316	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1160608	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11631125	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11637103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11855682	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12439018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12441929	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12900846	0.85[AMR][1000 genomes]
rs12901966	0.83[AMR][1000 genomes]
rs12908610	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12910393	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12912445	0.80[AMR][1000 genomes]
rs12913503	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1562250	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963894	0.81[AMR][1000 genomes]
rs2278694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415135	0.85[AMR][1000 genomes]
rs2415139	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2415141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3842946	0.85[AMR][1000 genomes]
rs4146285	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4146286	0.85[AMR][1000 genomes]
rs4776601	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776602	0.83[AMR][1000 genomes]
rs4776603	0.83[AMR][1000 genomes]
rs4777512	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777514	0.83[AMR][1000 genomes]
rs4777516	0.83[AMR][1000 genomes]
rs4777520	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495011	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7167521	0.83[EUR][1000 genomes]
rs7174287	0.83[ASN][1000 genomes]
rs7177472	0.81[AMR][1000 genomes]
rs7496556	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs8026681	0.81[AMR][1000 genomes]
rs8030499	0.80[AMR][1000 genomes]
rs8037282	0.83[AMR][1000 genomes]
rs8038734	0.85[AMR][1000 genomes]
rs8038934	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:72771600-72826000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:72772600-72820800	Weak transcription	Thymus	Thymus
4	chr15:72773000-72817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:72773000-72819600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:72775600-72832800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:72780400-72812400	Weak transcription	HepG2	liver
8	chr15:72782600-72828400	Weak transcription	K562	blood
9	chr15:72784200-72813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:72784600-72821400	Weak transcription	HUVEC	blood vessel
11	chr15:72789400-72821600	Weak transcription	Small Intestine	intestine
12	chr15:72790200-72821600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:72790600-72814600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:72792200-72830800	Weak transcription	HSMM	muscle
15	chr15:72792400-72814000	Weak transcription	Fetal Thymus	thymus
16	chr15:72792400-72816000	Weak transcription	Placenta	Placenta
17	chr15:72792400-72817400	Weak transcription	Hela-S3	cervix
18	chr15:72793000-72814600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:72793200-72831400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:72793600-72812600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:72793600-72813400	Weak transcription	Dnd41	blood
22	chr15:72794200-72833200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:72794400-72831600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:72795200-72826000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:72795800-72812800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:72795800-72814200	Weak transcription	Brain Angular Gyrus	brain
27	chr15:72796400-72833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:72796400-72833000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:72796800-72814000	Weak transcription	Lung	lung
30	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
31	chr15:72797000-72833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:72797200-72808800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:72797200-72813200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:72797200-72821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:72797400-72814600	Weak transcription	Primary T cells from cord blood	blood
36	chr15:72797600-72813800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:72798200-72810400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:72798200-72810400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr15:72798200-72812200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:72798200-72814200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:72798200-72833000	Weak transcription	Gastric	stomach
42	chr15:72798600-72812000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:72801400-72818000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr15:72803200-72809400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr15:72804000-72813200	Weak transcription	Ovary	ovary
46	chr15:72804000-72821600	Weak transcription	Right Atrium	heart
47	chr15:72804000-72828200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:72804200-72818800	Weak transcription	Psoas Muscle	Psoas
49	chr15:72804400-72825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:72805600-72814800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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