Variant report

Variant	rs4146286
Chromosome Location	chr15:72813666-72813667
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72813036..72815147-chr15:72818986..72821364,2	MCF-7	breast:
2	chr15:72809520..72812570-chr15:72813395..72817000,4	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10438370	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851858	0.81[AMR][1000 genomes]
rs11072372	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11072376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1133316	0.81[AMR][1000 genomes]
rs11637103	0.85[AMR][1000 genomes]
rs11638897	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439018	0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12439127	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12900846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901966	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910393	0.82[AMR][1000 genomes]
rs12917453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13379630	0.82[JPT][hapmap]
rs1374092	0.85[AMR][1000 genomes]
rs1562250	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16956866	0.88[JPT][hapmap]
rs16956899	0.88[JPT][hapmap]
rs16956956	0.82[EUR][1000 genomes]
rs16956988	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16957064	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs16957095	0.82[EUR][1000 genomes]
rs16957189	0.89[CEU][hapmap]
rs1812842	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963894	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1972692	1.00[CHB][hapmap]
rs2278694	0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2415135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415136	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415137	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415141	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28393893	0.89[EUR][1000 genomes]
rs28429820	0.83[ASN][1000 genomes]
rs28607101	0.83[ASN][1000 genomes]
rs3743230	0.88[JPT][hapmap]
rs3842946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776601	0.85[AMR][1000 genomes]
rs4776602	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776603	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777514	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777516	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4777517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57155740	0.91[ASN][1000 genomes]
rs57769940	0.83[ASN][1000 genomes]
rs58110372	0.91[ASN][1000 genomes]
rs59029026	0.83[ASN][1000 genomes]
rs60106752	0.91[ASN][1000 genomes]
rs60207997	0.91[ASN][1000 genomes]
rs60702445	0.82[EUR][1000 genomes]
rs6495011	0.81[AMR][1000 genomes]
rs7162856	0.82[EUR][1000 genomes]
rs7174307	0.91[ASN][1000 genomes]
rs7175376	0.89[CEU][hapmap]
rs7175437	0.91[ASN][1000 genomes]
rs7177472	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735137	0.82[EUR][1000 genomes]
rs72735139	0.82[EUR][1000 genomes]
rs72735141	0.82[EUR][1000 genomes]
rs72735156	0.82[EUR][1000 genomes]
rs72735160	0.82[EUR][1000 genomes]
rs72735166	0.82[EUR][1000 genomes]
rs72735170	0.82[EUR][1000 genomes]
rs73442591	0.91[ASN][1000 genomes]
rs73442595	0.91[ASN][1000 genomes]
rs73444703	0.91[ASN][1000 genomes]
rs73444714	0.91[ASN][1000 genomes]
rs73444720	0.91[ASN][1000 genomes]
rs73444723	0.91[ASN][1000 genomes]
rs73444736	0.91[ASN][1000 genomes]
rs73444755	0.91[ASN][1000 genomes]
rs73444759	0.91[ASN][1000 genomes]
rs73444761	0.91[ASN][1000 genomes]
rs73444773	0.91[ASN][1000 genomes]
rs73444774	0.91[ASN][1000 genomes]
rs73444791	0.91[ASN][1000 genomes]
rs73444794	0.91[ASN][1000 genomes]
rs73444798	0.91[ASN][1000 genomes]
rs73444802	0.91[ASN][1000 genomes]
rs73446604	0.91[ASN][1000 genomes]
rs8024715	0.89[CEU][hapmap]
rs8025088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035007	0.91[ASN][1000 genomes]
rs8037282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1054626	chr15:72811402-72867502	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv569948	chr15:72811402-72878772	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:72771600-72826000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:72772600-72820800	Weak transcription	Thymus	Thymus
4	chr15:72773000-72817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:72773000-72819600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:72775600-72832800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:72782600-72828400	Weak transcription	K562	blood
8	chr15:72784200-72813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:72784600-72821400	Weak transcription	HUVEC	blood vessel
10	chr15:72789400-72821600	Weak transcription	Small Intestine	intestine
11	chr15:72790200-72821600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:72790600-72814600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:72792200-72830800	Weak transcription	HSMM	muscle
14	chr15:72792400-72814000	Weak transcription	Fetal Thymus	thymus
15	chr15:72792400-72816000	Weak transcription	Placenta	Placenta
16	chr15:72792400-72817400	Weak transcription	Hela-S3	cervix
17	chr15:72793000-72814600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:72793200-72831400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:72794200-72833200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:72794400-72831600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:72795200-72826000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:72795800-72814200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:72796400-72833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:72796400-72833000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:72796800-72814000	Weak transcription	Lung	lung
26	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
27	chr15:72797000-72833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:72797200-72821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:72797400-72814600	Weak transcription	Primary T cells from cord blood	blood
30	chr15:72797600-72813800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:72798200-72814200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:72798200-72833000	Weak transcription	Gastric	stomach
33	chr15:72801400-72818000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:72804000-72821600	Weak transcription	Right Atrium	heart
35	chr15:72804000-72828200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:72804200-72818800	Weak transcription	Psoas Muscle	Psoas
37	chr15:72804400-72825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:72805600-72814800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:72805600-72822600	Weak transcription	Liver	Liver
40	chr15:72805600-72824400	Weak transcription	Fetal Kidney	kidney
41	chr15:72805600-72848200	Weak transcription	Fetal Brain Male	brain
42	chr15:72805800-72818200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:72806400-72831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:72806400-72833000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:72806600-72846800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:72807000-72823600	Weak transcription	Spleen	Spleen
47	chr15:72807400-72818800	Weak transcription	Left Ventricle	heart
48	chr15:72807400-72821200	Weak transcription	Pancreas	Pancrea
49	chr15:72807600-72814200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:72807600-72833000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links