Variant report

Variant	rs60702445
Chromosome Location	chr15:72719430-72719431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10438370	0.82[EUR][1000 genomes]
rs10518988	0.82[EUR][1000 genomes]
rs11072372	0.82[EUR][1000 genomes]
rs11638897	0.82[EUR][1000 genomes]
rs12439127	0.82[EUR][1000 genomes]
rs12901966	0.82[EUR][1000 genomes]
rs16956956	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1812842	0.82[EUR][1000 genomes]
rs1963894	0.82[EUR][1000 genomes]
rs2415135	0.82[EUR][1000 genomes]
rs2415137	0.82[EUR][1000 genomes]
rs28393893	0.92[EUR][1000 genomes]
rs35855297	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3842946	0.82[EUR][1000 genomes]
rs4146286	0.82[EUR][1000 genomes]
rs7162856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174825	0.85[EUR][1000 genomes]
rs7175376	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72735120	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72735137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735139	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735149	0.85[EUR][1000 genomes]
rs72735156	1.00[EUR][1000 genomes]
rs72735160	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735166	1.00[EUR][1000 genomes]
rs72735170	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735173	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72735181	0.91[EUR][1000 genomes]
rs72735185	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735188	0.83[EUR][1000 genomes]
rs8023504	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8024715	0.88[EUR][1000 genomes]
rs8025088	0.85[EUR][1000 genomes]
rs8026681	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72718800-72719800	Enhancers	Primary T cells from cord blood	blood

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