Variant report

Variant	rs28393893
Chromosome Location	chr15:72737032-72737033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72734530..72737401-chr15:72764364..72766706,2	K562	blood:

Variant related genes	Relation type
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10220917	1.00[ASN][1000 genomes]
rs10438370	0.89[EUR][1000 genomes]
rs10518988	0.89[EUR][1000 genomes]
rs11072372	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072376	0.82[EUR][1000 genomes]
rs11638897	0.89[EUR][1000 genomes]
rs12324592	1.00[ASN][1000 genomes]
rs12439127	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900846	0.82[EUR][1000 genomes]
rs12901966	0.89[EUR][1000 genomes]
rs12903882	1.00[ASN][1000 genomes]
rs13379855	1.00[ASN][1000 genomes]
rs16953788	1.00[ASN][1000 genomes]
rs16956667	1.00[ASN][1000 genomes]
rs16956675	1.00[ASN][1000 genomes]
rs16956759	1.00[ASN][1000 genomes]
rs16956826	1.00[ASN][1000 genomes]
rs16956956	0.92[EUR][1000 genomes]
rs16957064	0.92[EUR][1000 genomes]
rs16957095	0.92[EUR][1000 genomes]
rs16957154	1.00[ASN][1000 genomes]
rs16957161	1.00[ASN][1000 genomes]
rs16957189	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812842	0.89[EUR][1000 genomes]
rs1816645	1.00[ASN][1000 genomes]
rs1963894	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415135	0.89[EUR][1000 genomes]
rs2415136	0.86[EUR][1000 genomes]
rs2415137	0.89[EUR][1000 genomes]
rs28408413	1.00[ASN][1000 genomes]
rs28422889	1.00[ASN][1000 genomes]
rs28429820	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28435710	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439115	1.00[ASN][1000 genomes]
rs28453701	1.00[ASN][1000 genomes]
rs28471053	1.00[ASN][1000 genomes]
rs28488862	1.00[ASN][1000 genomes]
rs28493570	1.00[ASN][1000 genomes]
rs28534054	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28541481	1.00[ASN][1000 genomes]
rs28602765	1.00[ASN][1000 genomes]
rs28607101	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28661594	1.00[ASN][1000 genomes]
rs28795465	1.00[ASN][1000 genomes]
rs28832330	1.00[ASN][1000 genomes]
rs2912208	1.00[ASN][1000 genomes]
rs2912209	1.00[ASN][1000 genomes]
rs2912211	1.00[ASN][1000 genomes]
rs2912212	1.00[ASN][1000 genomes]
rs2912213	1.00[ASN][1000 genomes]
rs2959936	1.00[ASN][1000 genomes]
rs2959942	1.00[ASN][1000 genomes]
rs35293819	1.00[ASN][1000 genomes]
rs35855297	0.88[EUR][1000 genomes]
rs3842946	0.89[EUR][1000 genomes]
rs4146286	0.89[EUR][1000 genomes]
rs4776602	0.82[EUR][1000 genomes]
rs4776603	0.82[EUR][1000 genomes]
rs4777514	0.82[EUR][1000 genomes]
rs4777516	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60702445	0.92[EUR][1000 genomes]
rs6495002	1.00[ASN][1000 genomes]
rs7162856	0.92[EUR][1000 genomes]
rs7175376	0.84[EUR][1000 genomes]
rs7177472	0.82[EUR][1000 genomes]
rs72735137	0.92[EUR][1000 genomes]
rs72735139	0.92[EUR][1000 genomes]
rs72735141	0.92[EUR][1000 genomes]
rs72735156	0.92[EUR][1000 genomes]
rs72735160	0.92[EUR][1000 genomes]
rs72735166	0.92[EUR][1000 genomes]
rs72735170	0.92[EUR][1000 genomes]
rs72735173	0.84[EUR][1000 genomes]
rs72735181	0.84[EUR][1000 genomes]
rs72735194	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440555	1.00[ASN][1000 genomes]
rs73440562	1.00[ASN][1000 genomes]
rs73440566	1.00[ASN][1000 genomes]
rs73440586	1.00[ASN][1000 genomes]
rs73442510	1.00[ASN][1000 genomes]
rs8024715	0.81[EUR][1000 genomes]
rs8025088	0.92[EUR][1000 genomes]
rs8026681	0.89[EUR][1000 genomes]
rs8038734	0.83[EUR][1000 genomes]
rs8039489	1.00[ASN][1000 genomes]
rs8192349	1.00[ASN][1000 genomes]
rs8192419	1.00[ASN][1000 genomes]
rs8192422	1.00[ASN][1000 genomes]
rs9806212	1.00[ASN][1000 genomes]
rs9806258	1.00[ASN][1000 genomes]
rs9806374	1.00[ASN][1000 genomes]
rs9944261	1.00[ASN][1000 genomes]
rs998225	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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