Variant report

Variant	rs8039489
Chromosome Location	chr15:72665242-72665243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72663502..72665826-chr15:72667714..72669671,3	MCF-7	breast:
2	chr15:72660052..72661960-chr15:72663740..72668025,4	MCF-7	breast:
3	chr15:72658842..72661325-chr15:72665023..72667156,2	K562	blood:
4	chr15:72661509..72665290-chr15:72667048..72670487,7	K562	blood:

Variant related genes	Relation type
ENSG00000260339	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000260729	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10220917	1.00[ASN][1000 genomes]
rs11072372	1.00[ASN][1000 genomes]
rs12324592	1.00[ASN][1000 genomes]
rs12439127	1.00[ASN][1000 genomes]
rs12903882	1.00[ASN][1000 genomes]
rs13379855	1.00[ASN][1000 genomes]
rs16953788	1.00[ASN][1000 genomes]
rs16956667	1.00[ASN][1000 genomes]
rs16956675	1.00[ASN][1000 genomes]
rs16956759	1.00[ASN][1000 genomes]
rs16956826	1.00[ASN][1000 genomes]
rs16957154	1.00[ASN][1000 genomes]
rs16957161	1.00[ASN][1000 genomes]
rs16957189	1.00[ASN][1000 genomes]
rs1816645	1.00[ASN][1000 genomes]
rs1963894	1.00[ASN][1000 genomes]
rs1972692	0.93[AMR][1000 genomes]
rs28393893	1.00[ASN][1000 genomes]
rs28408413	1.00[ASN][1000 genomes]
rs28422889	1.00[ASN][1000 genomes]
rs28435710	1.00[ASN][1000 genomes]
rs28439115	1.00[ASN][1000 genomes]
rs28453701	1.00[ASN][1000 genomes]
rs28471053	1.00[ASN][1000 genomes]
rs28488862	1.00[ASN][1000 genomes]
rs28493570	1.00[ASN][1000 genomes]
rs28534054	1.00[ASN][1000 genomes]
rs28541481	1.00[ASN][1000 genomes]
rs28602765	1.00[ASN][1000 genomes]
rs28661594	1.00[ASN][1000 genomes]
rs28795465	1.00[ASN][1000 genomes]
rs28832330	1.00[ASN][1000 genomes]
rs2912208	1.00[ASN][1000 genomes]
rs2912209	1.00[ASN][1000 genomes]
rs2912211	1.00[ASN][1000 genomes]
rs2912212	1.00[ASN][1000 genomes]
rs2912213	1.00[ASN][1000 genomes]
rs2959936	1.00[ASN][1000 genomes]
rs2959942	1.00[ASN][1000 genomes]
rs35293819	1.00[ASN][1000 genomes]
rs4777504	0.86[AFR][1000 genomes]
rs4777516	1.00[ASN][1000 genomes]
rs6495002	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72735194	1.00[ASN][1000 genomes]
rs73440555	1.00[ASN][1000 genomes]
rs73440562	1.00[ASN][1000 genomes]
rs73440566	1.00[ASN][1000 genomes]
rs73440586	1.00[ASN][1000 genomes]
rs73442510	1.00[ASN][1000 genomes]
rs8192349	1.00[ASN][1000 genomes]
rs8192419	1.00[ASN][1000 genomes]
rs8192422	1.00[ASN][1000 genomes]
rs9806212	1.00[ASN][1000 genomes]
rs9806258	1.00[ASN][1000 genomes]
rs9806374	1.00[ASN][1000 genomes]
rs9944261	1.00[ASN][1000 genomes]
rs998225	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
2	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:72640600-72667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:72642000-72667000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:72648600-72667000	Weak transcription	Colonic Mucosa	Colon
8	chr15:72648600-72667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:72648800-72667000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:72649000-72667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:72649200-72666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:72649200-72667000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:72649200-72667000	Weak transcription	Fetal Brain Female	brain
14	chr15:72649200-72667600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:72649400-72666600	Weak transcription	Gastric	stomach
16	chr15:72649400-72667000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:72651400-72667200	Weak transcription	Brain Angular Gyrus	brain
18	chr15:72651600-72667800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:72651800-72666800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:72651800-72667000	Weak transcription	NHDF-Ad	bronchial
21	chr15:72651800-72667000	Weak transcription	Osteobl	bone
22	chr15:72651800-72667200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:72651800-72667200	Weak transcription	HSMM	muscle
24	chr15:72651800-72667200	Weak transcription	NHLF	lung
25	chr15:72652000-72666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:72658800-72666600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:72659400-72667000	Weak transcription	HSMMtube	muscle
28	chr15:72659600-72666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:72660000-72665800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:72660200-72666600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:72660200-72666600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:72661200-72666400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:72661200-72667400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr15:72661400-72667200	Weak transcription	Right Ventricle	heart
35	chr15:72661600-72665600	Weak transcription	Brain Germinal Matrix	brain
36	chr15:72661600-72667400	Weak transcription	Esophagus	oesophagus
37	chr15:72661600-72667800	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr15:72661800-72666200	Weak transcription	Fetal Brain Male	brain
39	chr15:72661800-72666600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:72661800-72667000	Weak transcription	Fetal Kidney	kidney
41	chr15:72661800-72667200	Weak transcription	Stomach Mucosa	stomach
42	chr15:72662000-72666400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:72662200-72666400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:72662200-72666600	Weak transcription	Right Atrium	heart
45	chr15:72662200-72667000	Weak transcription	Placenta	Placenta
46	chr15:72662600-72665400	Weak transcription	A549	lung
47	chr15:72663000-72665600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:72663000-72666400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:72663000-72666600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:72663000-72666800	Weak transcription	HUVEC	blood vessel

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