Variant report

Variant	rs9806212
Chromosome Location	chr15:72653993-72653994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72653000..72656526-chr15:72666576..72670191,4	MCF-7	breast:
2	chr15:72636459..72639091-chr15:72653803..72655961,2	K562	blood:
3	chr15:72653116..72655122-chr15:72658200..72660549,2	K562	blood:
4	chr15:72653916..72656612-chr15:72659800..72662436,2	K562	blood:
5	chr15:72649583..72651262-chr15:72653562..72655522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213614	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000260729	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10220917	1.00[CHB][hapmap];0.88[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11072372	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12324592	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12439127	1.00[ASN][1000 genomes]
rs12442820	1.00[CHB][hapmap]
rs12903882	1.00[ASN][1000 genomes]
rs13379855	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953788	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956667	1.00[ASN][1000 genomes]
rs16956675	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16956826	1.00[CHB][hapmap];0.93[LWK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956904	1.00[CHB][hapmap]
rs16957154	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957161	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957189	1.00[ASN][1000 genomes]
rs1816645	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1963894	1.00[ASN][1000 genomes]
rs2162236	0.88[MEX][hapmap]
rs28393893	1.00[ASN][1000 genomes]
rs28408413	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28422889	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28435710	1.00[ASN][1000 genomes]
rs28439115	1.00[ASN][1000 genomes]
rs28453701	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28471053	1.00[ASN][1000 genomes]
rs28488862	1.00[ASN][1000 genomes]
rs28493570	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28534054	1.00[ASN][1000 genomes]
rs28541481	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28602765	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28661594	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28795465	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28832330	1.00[ASN][1000 genomes]
rs2912208	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912209	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912211	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912212	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912213	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912221	0.88[MEX][hapmap]
rs2959925	0.88[MEX][hapmap]
rs2959936	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2959940	0.81[AMR][1000 genomes]
rs2959942	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35293819	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4776593	0.88[MEX][hapmap]
rs4777501	0.88[MEX][hapmap]
rs4777516	1.00[ASN][1000 genomes]
rs6495002	1.00[CHB][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs72735194	1.00[ASN][1000 genomes]
rs73440555	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73440562	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73440566	1.00[ASN][1000 genomes]
rs73440586	1.00[ASN][1000 genomes]
rs73442510	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8039489	1.00[ASN][1000 genomes]
rs8192349	1.00[ASN][1000 genomes]
rs8192419	1.00[ASN][1000 genomes]
rs8192422	1.00[ASN][1000 genomes]
rs9672916	0.86[MEX][hapmap]
rs9806258	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806374	0.89[ASW][hapmap];1.00[CHB][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9944261	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs998225	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
2	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:72640600-72667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:72641800-72664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:72642000-72667000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:72644000-72660400	Weak transcription	Fetal Brain Male	brain
9	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:72648600-72667000	Weak transcription	Colonic Mucosa	Colon
11	chr15:72648600-72667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:72648800-72667000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:72649000-72662200	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:72649000-72667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72649200-72658200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:72649200-72658200	Weak transcription	Dnd41	blood
17	chr15:72649200-72658400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:72649200-72660000	Weak transcription	Fetal Lung	lung
19	chr15:72649200-72660600	Weak transcription	Fetal Kidney	kidney
20	chr15:72649200-72660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:72649200-72661600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:72649200-72662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:72649200-72663800	Weak transcription	Pancreas	Pancrea
24	chr15:72649200-72666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:72649200-72667000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:72649200-72667000	Weak transcription	Fetal Brain Female	brain
27	chr15:72649200-72667600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:72649400-72658200	Weak transcription	Hela-S3	cervix
29	chr15:72649400-72659600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:72649400-72663400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:72649400-72666600	Weak transcription	Gastric	stomach
32	chr15:72649400-72667000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:72649600-72662400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:72649800-72660800	Weak transcription	Brain Germinal Matrix	brain
35	chr15:72650000-72655200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:72650000-72660600	Weak transcription	Liver	Liver
37	chr15:72650200-72655200	Weak transcription	Fetal Intestine Large	intestine
38	chr15:72650200-72658400	Weak transcription	Fetal Thymus	thymus
39	chr15:72650400-72655600	Weak transcription	Aorta	Aorta
40	chr15:72650400-72657800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:72650600-72660600	Weak transcription	Right Ventricle	heart
42	chr15:72650800-72659800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:72651200-72654000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:72651200-72654600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:72651200-72655200	Weak transcription	Thymus	Thymus
46	chr15:72651400-72667200	Weak transcription	Brain Angular Gyrus	brain
47	chr15:72651600-72654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:72651600-72654800	Weak transcription	Primary T cells from cord blood	blood
49	chr15:72651600-72656800	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:72651600-72658000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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