Variant report

Variant	rs4777501
Chromosome Location	chr15:72629721-72629722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72628583..72630341-chr15:72765129..72766699,2	K562	blood:

Variant related genes	Relation type
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10220850	1.00[CEU][hapmap]
rs10220917	1.00[MEX][hapmap]
rs10518987	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11632505	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12324592	0.88[MEX][hapmap]
rs12324744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12899442	1.00[ASN][1000 genomes]
rs12904378	1.00[CEU][hapmap]
rs12906356	0.84[ASN][1000 genomes]
rs12906612	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12906942	1.00[CEU][hapmap]
rs12907087	0.84[ASN][1000 genomes]
rs12907377	0.84[ASN][1000 genomes]
rs12907707	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12908883	1.00[CEU][hapmap]
rs12909590	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12911285	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12914269	0.84[ASN][1000 genomes]
rs12916226	0.84[ASN][1000 genomes]
rs12917402	1.00[ASN][1000 genomes]
rs1426169	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1972692	0.89[MEX][hapmap]
rs2162236	1.00[MEX][hapmap]
rs2288257	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28573838	0.82[ASN][1000 genomes]
rs28712686	1.00[EUR][1000 genomes]
rs2912203	0.89[ASN][1000 genomes]
rs2912204	0.89[ASN][1000 genomes]
rs2912211	0.88[MEX][hapmap]
rs2912215	0.89[ASN][1000 genomes]
rs2912220	1.00[EUR][1000 genomes]
rs2912221	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2912222	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2912223	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2912224	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2912225	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959916	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959917	0.89[ASN][1000 genomes]
rs2959918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959919	1.00[CEU][hapmap];0.89[ASN][1000 genomes]
rs2959922	1.00[EUR][1000 genomes]
rs2959923	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959924	0.89[ASN][1000 genomes]
rs2959925	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2959926	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2959927	0.89[ASN][1000 genomes]
rs2959929	0.89[ASN][1000 genomes]
rs2959931	0.89[ASN][1000 genomes]
rs2959933	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959935	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959940	1.00[ASN][1000 genomes]
rs34115124	0.89[ASN][1000 genomes]
rs34211376	0.89[ASN][1000 genomes]
rs34346715	0.84[ASN][1000 genomes]
rs34382909	0.84[ASN][1000 genomes]
rs34511502	0.89[ASN][1000 genomes]
rs34538801	0.89[ASN][1000 genomes]
rs34658339	0.84[ASN][1000 genomes]
rs34677662	0.89[ASN][1000 genomes]
rs34789424	0.89[ASN][1000 genomes]
rs34815962	0.84[ASN][1000 genomes]
rs35104697	0.84[ASN][1000 genomes]
rs35202897	0.89[ASN][1000 genomes]
rs35285520	0.84[ASN][1000 genomes]
rs35378070	0.84[ASN][1000 genomes]
rs35457238	0.89[ASN][1000 genomes]
rs35694406	0.84[ASN][1000 genomes]
rs36110969	0.84[ASN][1000 genomes]
rs3743227	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3743228	0.84[ASN][1000 genomes]
rs3743229	0.84[ASN][1000 genomes]
rs3759901	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4776592	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776593	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57420281	0.84[ASN][1000 genomes]
rs57692836	0.84[ASN][1000 genomes]
rs58352854	0.84[ASN][1000 genomes]
rs6495002	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs66608810	0.84[ASN][1000 genomes]
rs67195650	0.84[ASN][1000 genomes]
rs71395066	0.84[ASN][1000 genomes]
rs71395068	0.84[ASN][1000 genomes]
rs71395070	0.84[ASN][1000 genomes]
rs71395074	0.89[ASN][1000 genomes]
rs71397231	0.89[ASN][1000 genomes]
rs71397232	0.89[ASN][1000 genomes]
rs71397233	0.89[ASN][1000 genomes]
rs71411063	0.89[ASN][1000 genomes]
rs7169150	0.84[ASN][1000 genomes]
rs73438446	0.84[ASN][1000 genomes]
rs8192359	0.84[ASN][1000 genomes]
rs8192387	0.84[ASN][1000 genomes]
rs8192397	0.84[ASN][1000 genomes]
rs9672916	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9806184	0.84[ASN][1000 genomes]
rs9806204	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9806212	0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613000-72631600	Weak transcription	Right Atrium	heart
2	chr15:72613000-72636000	Weak transcription	Right Ventricle	heart
3	chr15:72613000-72636400	Weak transcription	Gastric	stomach
4	chr15:72613000-72637000	Weak transcription	Colonic Mucosa	Colon
5	chr15:72613200-72630600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:72613200-72630600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:72613200-72630800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:72613200-72631600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:72613200-72633000	Weak transcription	Thymus	Thymus
10	chr15:72613200-72633600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:72613200-72634200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:72613200-72635600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:72613200-72635800	Weak transcription	Pancreas	Pancrea
14	chr15:72613200-72636000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:72613200-72636200	Weak transcription	HSMMtube	muscle
16	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
17	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
18	chr15:72613400-72630000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:72613400-72630000	Weak transcription	Brain Angular Gyrus	brain
20	chr15:72613400-72630200	Weak transcription	Fetal Brain Male	brain
21	chr15:72613400-72631000	Weak transcription	Hela-S3	cervix
22	chr15:72613400-72632200	Weak transcription	NH-A	brain
23	chr15:72613400-72633600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:72613400-72633600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:72613400-72633600	Weak transcription	Fetal Thymus	thymus
26	chr15:72613400-72633600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:72613400-72634000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:72613400-72634000	Weak transcription	Spleen	Spleen
29	chr15:72613400-72634400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:72613400-72635800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:72613400-72636600	Weak transcription	HSMM	muscle
32	chr15:72613400-72638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr15:72613800-72634000	Weak transcription	Fetal Brain Female	brain
35	chr15:72613800-72636400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:72614000-72630800	Weak transcription	Ovary	ovary
37	chr15:72614000-72636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:72614000-72636400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:72614000-72642400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:72616800-72633600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:72617000-72633400	Weak transcription	GM12878-XiMat	blood
42	chr15:72617200-72630000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:72617600-72630200	Weak transcription	Primary T cells from cord blood	blood
44	chr15:72618800-72630200	Weak transcription	Fetal Lung	lung
45	chr15:72618800-72636800	Weak transcription	Fetal Kidney	kidney
46	chr15:72619000-72630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:72619400-72630200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr15:72619400-72630800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:72619600-72631000	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:72619600-72634000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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