Variant report

Variant	rs2162236
Chromosome Location	chr15:72609698-72609699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72608939..72610924-chr15:72666967..72669105,2	MCF-7	breast:
2	chr15:72601652..72603635-chr15:72608063..72611795,3	MCF-7	breast:
3	chr15:72609440..72614186-chr15:72765313..72769259,6	MCF-7	breast:
4	chr15:72596806..72599698-chr15:72608148..72610038,2	K562	blood:
5	chr15:72605367..72607663-chr15:72607740..72610413,3	MCF-7	breast:
6	chr15:72523405..72525038-chr15:72609598..72611292,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213614	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000140488	Chromatin interaction
ENSG00000260339	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10152588	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10220917	1.00[MEX][hapmap]
rs10518988	1.00[CHB][hapmap]
rs12102191	1.00[EUR][1000 genomes]
rs12102206	1.00[EUR][1000 genomes]
rs12324592	0.88[MEX][hapmap]
rs12899167	1.00[GIH][hapmap]
rs12911449	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16956667	1.00[EUR][1000 genomes]
rs16956899	0.85[CHD][hapmap]
rs1800431	1.00[GIH][hapmap]
rs1972692	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[ASN][1000 genomes]
rs2009365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375199	1.00[EUR][1000 genomes]
rs28435418	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478343	1.00[EUR][1000 genomes]
rs28562796	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626831	1.00[EUR][1000 genomes]
rs28663089	1.00[EUR][1000 genomes]
rs28712686	0.87[AMR][1000 genomes]
rs2912205	0.97[AFR][1000 genomes]
rs2912211	0.88[MEX][hapmap]
rs2912216	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2912220	0.87[AMR][1000 genomes]
rs2912221	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs2912223	0.81[AMR][1000 genomes]
rs2912226	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2912228	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2912229	0.91[YRI][hapmap];0.97[AFR][1000 genomes]
rs2959913	0.92[ASN][1000 genomes]
rs2959922	0.87[AMR][1000 genomes]
rs2959925	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs2959926	0.87[AMR][1000 genomes]
rs3743230	1.00[CHD][hapmap]
rs4776593	1.00[MEX][hapmap]
rs4777501	1.00[MEX][hapmap]
rs4777502	1.00[GIH][hapmap]
rs59262103	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60790003	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61100297	1.00[EUR][1000 genomes]
rs6494999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495002	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7175677	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179350	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7182307	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438487	0.81[AFR][1000 genomes]
rs73440566	1.00[EUR][1000 genomes]
rs73442522	0.83[ASN][1000 genomes]
rs8025088	1.00[CHB][hapmap]
rs8026681	1.00[CHB][hapmap]
rs8031264	0.92[ASN][1000 genomes]
rs8032276	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8037749	1.00[GIH][hapmap]
rs8039839	1.00[EUR][1000 genomes]
rs8192417	1.00[EUR][1000 genomes]
rs8192427	1.00[EUR][1000 genomes]
rs962407	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9672916	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs9806212	0.88[MEX][hapmap]
rs9972606	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
2	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72578000-72611800	Weak transcription	Ovary	ovary
4	chr15:72582000-72611800	Weak transcription	Spleen	Spleen
5	chr15:72583800-72611600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:72596000-72612400	Weak transcription	Adipose Nuclei	Adipose
7	chr15:72599200-72611400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:72599200-72611600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:72599400-72610800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:72600000-72610400	Weak transcription	Brain Angular Gyrus	brain
11	chr15:72600000-72611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:72602000-72612800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:72604600-72610800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:72608000-72612400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:72608000-72612600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:72608800-72610200	Weak transcription	Fetal Brain Male	brain
17	chr15:72608800-72611000	Weak transcription	Placenta	Placenta
18	chr15:72609000-72610200	Weak transcription	Fetal Brain Female	brain
19	chr15:72609200-72609800	Enhancers	HepG2	liver
20	chr15:72609400-72612400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:72609600-72610000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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