Variant report

Variant	rs16956899
Chromosome Location	chr15:72695891-72695892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72694796..72696864-chr15:72698054..72700450,2	K562	blood:
2	chr15:72689682..72691374-chr15:72695754..72697679,2	K562	blood:
3	chr15:72671439..72674261-chr15:72694847..72697279,2	MCF-7	breast:
4	chr15:72693776..72696296-chr15:72698054..72700982,3	K562	blood:

Variant related genes	Relation type
ENSG00000243007	Chromatin interaction
ENSG00000187806	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10518988	0.88[JPT][hapmap]
rs11072376	0.88[JPT][hapmap]
rs12900846	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16956866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956988	0.84[ASW][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1800430	1.00[ASW][hapmap];0.88[YRI][hapmap]
rs1972692	0.85[CHD][hapmap];0.87[ASN][1000 genomes]
rs2162236	0.85[CHD][hapmap]
rs2415135	0.88[JPT][hapmap]
rs2912216	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2912228	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2959913	0.87[ASN][1000 genomes]
rs3743230	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4777517	0.88[JPT][hapmap]
rs57155740	0.82[ASN][1000 genomes]
rs58110372	0.82[ASN][1000 genomes]
rs60106752	0.82[ASN][1000 genomes]
rs60207997	0.82[ASN][1000 genomes]
rs7174307	0.82[ASN][1000 genomes]
rs7175437	0.82[ASN][1000 genomes]
rs73442522	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73442536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442539	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73442549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73442560	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442591	0.82[ASN][1000 genomes]
rs73442595	0.82[ASN][1000 genomes]
rs73444703	0.82[ASN][1000 genomes]
rs73444714	0.82[ASN][1000 genomes]
rs73444720	0.82[ASN][1000 genomes]
rs73444723	0.82[ASN][1000 genomes]
rs73444736	0.82[ASN][1000 genomes]
rs73444755	0.82[ASN][1000 genomes]
rs73444759	0.82[ASN][1000 genomes]
rs73444761	0.82[ASN][1000 genomes]
rs73444773	0.82[ASN][1000 genomes]
rs73444774	0.82[ASN][1000 genomes]
rs73444791	0.82[ASN][1000 genomes]
rs73444794	0.82[ASN][1000 genomes]
rs73444798	0.82[ASN][1000 genomes]
rs73444802	0.82[ASN][1000 genomes]
rs73446604	0.82[ASN][1000 genomes]
rs8025088	0.88[JPT][hapmap]
rs8026681	0.88[JPT][hapmap]
rs8031264	0.87[ASN][1000 genomes]
rs8032276	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs8035007	0.82[ASN][1000 genomes]
rs8037282	0.88[JPT][hapmap]
rs962407	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs9972606	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links