Variant report

Variant	rs58110372
Chromosome Location	chr15:72755154-72755155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72750881..72760234-chr15:72764528..72769120,23	MCF-7	breast:
2	chr15:72746883..72750315-chr15:72753008..72756408,4	K562	blood:
3	chr15:72747769..72750315-chr15:72752830..72755638,3	K562	blood:
4	chr15:72750207..72758265-chr15:72764578..72767350,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10438370	0.91[ASN][1000 genomes]
rs10518988	0.91[ASN][1000 genomes]
rs11072376	0.91[ASN][1000 genomes]
rs11638897	0.91[ASN][1000 genomes]
rs12900846	0.91[ASN][1000 genomes]
rs12901966	0.91[ASN][1000 genomes]
rs12916097	0.90[AFR][1000 genomes]
rs16956866	0.82[ASN][1000 genomes]
rs16956899	0.82[ASN][1000 genomes]
rs16956988	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812842	0.91[ASN][1000 genomes]
rs2415135	0.91[ASN][1000 genomes]
rs2415136	0.84[ASN][1000 genomes]
rs2415137	0.91[ASN][1000 genomes]
rs3743230	0.82[ASN][1000 genomes]
rs3842946	0.91[ASN][1000 genomes]
rs4146286	0.91[ASN][1000 genomes]
rs4776602	0.91[ASN][1000 genomes]
rs4776603	0.91[ASN][1000 genomes]
rs4777514	0.91[ASN][1000 genomes]
rs57155740	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57769940	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59029026	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59751560	1.00[AMR][1000 genomes]
rs60106752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60207997	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60466172	1.00[AMR][1000 genomes]
rs60920713	1.00[AMR][1000 genomes]
rs7174307	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7175437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7177472	0.91[ASN][1000 genomes]
rs73442536	0.82[ASN][1000 genomes]
rs73442539	0.82[ASN][1000 genomes]
rs73442560	0.82[ASN][1000 genomes]
rs73442591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444720	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444723	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444736	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444755	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444773	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444774	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444791	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444794	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444798	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444802	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446604	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446615	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446634	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8025088	0.91[ASN][1000 genomes]
rs8026681	0.91[ASN][1000 genomes]
rs8035007	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8036623	1.00[AMR][1000 genomes]
rs8036629	1.00[AMR][1000 genomes]
rs8037282	0.91[ASN][1000 genomes]
rs8038734	0.91[ASN][1000 genomes]
rs8039365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72754600-72764800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:72754600-72765400	Weak transcription	NHDF-Ad	bronchial
3	chr15:72754800-72765000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:72754800-72765000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:72754800-72765200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:72754800-72765200	Weak transcription	Brain Substantia Nigra	brain
7	chr15:72754800-72765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:72754800-72765400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:72754800-72765400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:72754800-72765400	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:72754800-72765400	Weak transcription	Fetal Lung	lung
12	chr15:72754800-72765400	Weak transcription	Placenta	Placenta
13	chr15:72754800-72765400	Weak transcription	Lung	lung
14	chr15:72754800-72765400	Weak transcription	Right Ventricle	heart
15	chr15:72754800-72765400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:72754800-72765600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:72755000-72755400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr15:72755000-72755800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr15:72755000-72755800	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:72755000-72756000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:72755000-72756200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr15:72755000-72756200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:72755000-72756200	Weak transcription	NHEK	skin
24	chr15:72755000-72756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:72755000-72756600	Weak transcription	Adipose Nuclei	Adipose
26	chr15:72755000-72756800	Weak transcription	GM12878-XiMat	blood
27	chr15:72755000-72758000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:72755000-72758200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:72755000-72763200	Weak transcription	Brain Anterior Caudate	brain
30	chr15:72755000-72763600	Weak transcription	Liver	Liver
31	chr15:72755000-72763600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:72755000-72763600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:72755000-72764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:72755000-72764600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:72755000-72765000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:72755000-72765000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:72755000-72765000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr15:72755000-72765000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:72755000-72765000	Weak transcription	NHLF	lung
40	chr15:72755000-72765200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:72755000-72765200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:72755000-72765200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:72755000-72765200	Weak transcription	HSMM	muscle
44	chr15:72755000-72765400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:72755000-72765400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:72755000-72765400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:72755000-72765400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:72755000-72765400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:72755000-72765600	Weak transcription	Left Ventricle	heart
50	chr15:72755000-72766000	Weak transcription	Ovary	ovary

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