Variant report

Variant	rs73446634
Chromosome Location	chr15:72902653-72902654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12916097	0.82[AFR][1000 genomes]
rs16956988	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28429820	0.91[ASN][1000 genomes]
rs28607101	0.91[ASN][1000 genomes]
rs4777517	0.91[ASN][1000 genomes]
rs57155740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57769940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58110372	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59029026	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60106752	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60207997	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7174307	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7175437	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73442591	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73442595	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444703	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444720	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444736	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444759	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444761	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444773	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444791	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8035007	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8036623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8036629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv977732	chr15:72897457-72963802	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3510859	chr15:72898800-72949834	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3510860	chr15:72898800-72949834	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72876200-72903400	Weak transcription	Brain Germinal Matrix	brain
3	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
4	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:72876800-72907600	Weak transcription	Lung	lung
6	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
8	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
9	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:72888000-72908200	Weak transcription	Right Ventricle	heart
11	chr15:72892600-72903600	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:72894600-72909000	Weak transcription	HSMMtube	muscle
13	chr15:72894800-72903800	Weak transcription	Fetal Intestine Small	intestine
14	chr15:72895200-72906000	Weak transcription	Fetal Brain Female	brain
15	chr15:72898400-72906200	Weak transcription	Spleen	Spleen
16	chr15:72898400-72910600	Weak transcription	Esophagus	oesophagus
17	chr15:72899200-72907600	Weak transcription	Right Atrium	heart
18	chr15:72899800-72905600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:72899800-72908000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:72900400-72908400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:72902000-72902800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:72902200-72907800	Weak transcription	Pancreas	Pancrea
23	chr15:72902600-72908400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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