Variant report

Variant	rs28607101
Chromosome Location	chr15:72888321-72888322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72876608..72879489-chr15:72887263..72889049,2	MCF-7	breast:
2	chr15:72887495..72890185-chr15:72895152..72897454,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10438370	0.83[ASN][1000 genomes]
rs10518988	0.83[ASN][1000 genomes]
rs11072376	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11638897	0.83[ASN][1000 genomes]
rs12900846	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12901966	0.83[ASN][1000 genomes]
rs16957189	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1808495	0.81[EUR][1000 genomes]
rs1812842	0.83[ASN][1000 genomes]
rs2415135	0.83[ASN][1000 genomes]
rs2415137	0.83[ASN][1000 genomes]
rs28393893	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28429820	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435710	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28460872	0.84[EUR][1000 genomes]
rs28534054	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28654703	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28766358	0.84[EUR][1000 genomes]
rs3842946	0.83[ASN][1000 genomes]
rs4146286	0.83[ASN][1000 genomes]
rs4776602	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4776603	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4777514	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4777516	0.82[EUR][1000 genomes]
rs4777517	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175376	0.84[EUR][1000 genomes]
rs7177472	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72735173	0.84[EUR][1000 genomes]
rs72735181	0.84[EUR][1000 genomes]
rs72735185	0.92[EUR][1000 genomes]
rs72735188	0.92[EUR][1000 genomes]
rs72735194	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73446615	0.91[ASN][1000 genomes]
rs73446634	0.91[ASN][1000 genomes]
rs8023504	0.92[EUR][1000 genomes]
rs8025088	0.83[ASN][1000 genomes]
rs8026681	0.83[ASN][1000 genomes]
rs8027871	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8036623	0.83[ASN][1000 genomes]
rs8036629	0.83[ASN][1000 genomes]
rs8037282	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8038734	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72870800-72896400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:72870800-72902200	Weak transcription	Gastric	stomach
4	chr15:72871600-72889400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:72874800-72899800	Weak transcription	Fetal Stomach	stomach
6	chr15:72876200-72903400	Weak transcription	Brain Germinal Matrix	brain
7	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:72876800-72907600	Weak transcription	Lung	lung
10	chr15:72877600-72889400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
13	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
14	chr15:72880000-72892200	Weak transcription	Liver	Liver
15	chr15:72880600-72889800	Weak transcription	Hela-S3	cervix
16	chr15:72881600-72896400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:72884000-72893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:72888000-72908200	Weak transcription	Right Ventricle	heart

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