Variant report

Variant	rs73446615
Chromosome Location	chr15:72883787-72883788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72882454..72884361-chr15:72885367..72887543,2	MCF-7	breast:
2	chr15:72870050..72872612-chr15:72882296..72884014,2	MCF-7	breast:
3	chr15:72882042..72883837-chr15:72890523..72892478,2	MCF-7	breast:
4	chr15:72878581..72880330-chr15:72883058..72885916,2	K562	blood:
5	chr15:72875994..72878313-chr15:72882141..72883878,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARIH1-1	chr15:72882032-72884186	ENSG00000260534.1

No data

Variant related genes	Relation type
ENSG00000207690	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12916097	0.82[AFR][1000 genomes]
rs16956988	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28429820	0.91[ASN][1000 genomes]
rs28607101	0.91[ASN][1000 genomes]
rs4777517	0.91[ASN][1000 genomes]
rs57155740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57769940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58110372	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59029026	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60106752	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60207997	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60920713	1.00[AMR][1000 genomes]
rs7174307	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7175437	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73442591	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73442595	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444703	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444720	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444736	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444759	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444761	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444773	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444774	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444791	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73444802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73446634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8035007	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8036623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8036629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72870800-72887800	Weak transcription	Right Ventricle	heart
3	chr15:72870800-72896400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:72870800-72902200	Weak transcription	Gastric	stomach
5	chr15:72871600-72889400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:72873400-72883800	Weak transcription	Aorta	Aorta
7	chr15:72873600-72884400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:72874800-72899800	Weak transcription	Fetal Stomach	stomach
9	chr15:72876200-72903400	Weak transcription	Brain Germinal Matrix	brain
10	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
11	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:72876600-72883800	Weak transcription	HSMMtube	muscle
13	chr15:72876800-72907600	Weak transcription	Lung	lung
14	chr15:72877600-72889400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:72878200-72884800	Weak transcription	Primary T cells from cord blood	blood
17	chr15:72878400-72884000	Weak transcription	HMEC	breast
18	chr15:72878400-72884400	Weak transcription	Fetal Kidney	kidney
19	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
20	chr15:72878800-72884400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:72879400-72884000	Weak transcription	GM12878-XiMat	blood
22	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:72880000-72892200	Weak transcription	Liver	Liver
24	chr15:72880200-72884600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:72880600-72889800	Weak transcription	Hela-S3	cervix
26	chr15:72881000-72884000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:72881600-72896400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:72882000-72883800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:72882000-72884600	Weak transcription	HSMM	muscle
30	chr15:72882000-72887000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:72882600-72884600	Enhancers	Osteobl	bone
32	chr15:72882800-72884600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:72883000-72883800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:72883000-72884200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:72883000-72884600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:72883400-72884200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:72883600-72884000	Enhancers	NH-A	brain

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